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Report for CCDS2196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2196.1 Public Homo sapiens 2 STAM2 24 110 108 CCDS HistoryNCBI Gene:10254Re-query CCDS DB by CCDS ID:2196.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2196.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263904.5 ENSP00000263904.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263904.5Link to Ensembl Protein Viewer:ENSP00000263904.4Re-query CCDS DB by Nucleotide ID:ENST00000263904Re-query CCDS DB by Protein ID:ENSP00000263904
Original member Current member NCBI NM_005843.6 NP_005834.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005843.6Link to Protein Sequence:NP_005834.4Re-query CCDS DB by Nucleotide ID:NM_005843Re-query CCDS DB by Protein ID:NP_005834Link to BLAST:NP_005834.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005834.4 525 O75886-1 525 100% 0 0

Chromosomal Locations for CCDS 2196.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152120574 152120802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152123766 152123935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152126226 152126379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152132114 152132168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152133173 152133260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152133402 152133484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152135509 152135603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152143827 152144013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152144888 152144957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152147162 152147308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152148024 152148122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152148225 152148300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152150145 152150229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152175603 152175642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGCCTTTGTTCACCGCCAACCCCTTCGAGCAAGACGTGGAAAAAGCCACGAATGAGTACAACACTACAG
AAGATTGGAGTCTTATTATGGACATATGTGACAAAGTTGGAAGTACTCCTAATGGAGCGAAAGATTGCCT
AAAAGCCATAATGAAAAGGGTAAATCATAAGGTTCCACATGTTGCTCTGCAAGCACTAACTCTTCTTGGG
GCTTGTGTGGCAAACTGTGGAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACAGAAGTAC
GTGCTGTGATTAAAAATAAGGCACATCCTAAAGTATGTGAAAAACTGAAATCTTTAATGGTGGAGTGGTC
AGAAGAATTTCAGAAGGACCCTCAGTTTAGTCTGATATCTGCAACTATTAAATCTATGAAAGAAGAAGGA
ATTACTTTTCCTCCAGCAGGTTCTCAGACTGTCTCAGCTGCTGCCAAGAATGGTACGTCATCGAACAAAA
ACAAAGAGGATGAAGACATAGCTAAAGCTATTGAATTATCGCTGCAAGAACAGAAACAGCAACACACAGA
AACAAAATCCTTATATCCATCTTCAGAAATTCAGTTAAATAATAAGGTTGCACGGAAAGTGAGAGCTTTA
TATGATTTTGAAGCTGTTGAGGACAATGAACTCACCTTTAAACATGGTGAAATAATTATTGTTTTGGATG
ACAGTGATGCCAATTGGTGGAAAGGAGAAAATCACAGAGGAATAGGACTTTTCCCATCCAATTTTGTAAC
AACTAATTTAAACATAGAGACTGAGGCAGCGGCTGTGGACAAATTGAATGTAATTGATGATGATGTGGAG
GAAATTAAGAAATCAGAGCCTGAGCCTGTTTATATAGATGAGGATAAGATGGATAGAGCCCTGCAGGTAC
TTCAGAGTATAGATCCAACAGATTCAAAACCAGACTCCCAAGACCTTTTGGATTTAGAAGATATCTGCCA
ACAGATGGGTCCAATGATAGATGAAAAACTTGAAGAAATTGATAGGAAGCATTCAGAATTGTCTGAATTG
AATGTTAAAGTCCTGGAAGCTCTGGAACTATATAACAAATTGGTGAATGAAGCACCAGTGTACTCAGTCT
ATTCAAAGCTCCACCCTCCAGCACATTACCCACCTGCATCATCTGGGGTTCCAATGCAGACATATCCAGT
TCAATCACATGGTGGAAACTATATGGGTCAGAGCATTCACCAAGTAACTGTTGCCCAAAGCTATAGCCTA
GGACCCGATCAAATTGGTCCACTGAGATCTCTGCCTCCAAATGTGAATTCCTCAGTGACAGCACAGCCTG
CTCAAACTTCATATTTAAGCACTGGACAAGACACTGTTTCCAATCCTACTTATATGAACCAGAACTCTAA
CCTACAGTCAGCTACTGGTACAACTGCTTACACACAGCAAATGGGGATGTCTGTGGATATGTCATCTTAT
CAGAACACTACTTCCAATTTGCCTCAACTGGCAGGCTTTCCGGTGACAGTTCCAGCTCATCCAGTTGCAC
AGCAGCACACAAATTACCATCAGCAGCCTCTCCTTTAG

Translation (525 aa):
MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLG
ACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEG
ITFPPAGSQTVSAAAKNGTSSNKNKEDEDIAKAIELSLQEQKQQHTETKSLYPSSEIQLNNKVARKVRAL
YDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAAVDKLNVIDDDVE
EIKKSEPEPVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELSEL
NVKVLEALELYNKLVNEAPVYSVYSKLHPPAHYPPASSGVPMQTYPVQSHGGNYMGQSIHQVTVAQSYSL
GPDQIGPLRSLPPNVNSSVTAQPAQTSYLSTGQDTVSNPTYMNQNSNLQSATGTTAYTQQMGMSVDMSSY
QNTTSNLPQLAGFPVTVPAHPVAQQHTNYHQQPLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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