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Report for CCDS9295.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9295.2 Public Homo sapiens 13 SAP18 24 110 108 CCDS HistoryNCBI Gene:10284Re-query CCDS DB by CCDS ID:9295.2See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 9295.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9295.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382533.9 ENSP00000371973.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382533.9Link to Ensembl Protein Viewer:ENSP00000371973.4Re-query CCDS DB by Nucleotide ID:ENST00000382533Re-query CCDS DB by Protein ID:ENSP00000371973
Original member Current member EBI ENST00000621421.4 ENSP00000481842.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621421.4Link to Ensembl Protein Viewer:ENSP00000481842.1Re-query CCDS DB by Nucleotide ID:ENST00000621421Re-query CCDS DB by Protein ID:ENSP00000481842
Original member Current member NCBI NM_005870.5 NP_005861.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005870.5Link to Protein Sequence:NP_005861.2Re-query CCDS DB by Nucleotide ID:NM_005870Re-query CCDS DB by Protein ID:NP_005861Link to BLAST:NP_005861.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005861.2 172 O00422-2 172 100% 0 0

Chromosomal Locations for CCDS 9295.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21140553 21140681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21140886 21140995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21146805 21146927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21147186 21147342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGCTCGCTGCAGGGGTCGGAGGTCAGGGCGAGCGTCTCGCAGGCCGTAGGAGGAAGATGGCGGTGGAGT
CGCGCGTTACCCAGGAGGAAATTAAGAAGGAGCCAGAGAAACCGATCGACCGCGAGAAGACATGCCCACT
GTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACGAGTTCTCCCGGGGAAATGTA
CCGTCCAGCGAGTTGCAGATCTACACTTGGATGGATGCAACCTTGAAAGAACTGACAAGCTTAGTAAAAG
AAGTCTACCCAGAAGCTAGAAAGAAGGGCACTCACTTCAATTTTGCAATCGTTTTTACAGATGTTAAAAG
ACCTGGCTATCGAGTTAAGGAGATTGGCAGCACCATGTCTGGCAGAAAGGGGACTGATGATTCCATGACC
CTGCAGTCGCAGAAGTTCCAGATAGGAGATTACTTGGACATAGCAATTACCCCTCCAAATCGGGCACCAC
CTCCTTCAGGGCGCATGAGACCATATTAA

Translation (172 aa):
MLAAGVGGQGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNV
PSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMT
LQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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