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Report for CCDS874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
874.1 Public Homo sapiens 1 BCAS2 24 110 108 CCDS HistoryNCBI Gene:10286Re-query CCDS DB by CCDS ID:874.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 874.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369541.4 ENSP00000358554.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369541.4Link to Ensembl Protein Viewer:ENSP00000358554.3Re-query CCDS DB by Nucleotide ID:ENST00000369541Re-query CCDS DB by Protein ID:ENSP00000358554
Original member Current member NCBI NM_005872.3 NP_005863.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005872.3Link to Protein Sequence:NP_005863.1Re-query CCDS DB by Nucleotide ID:NM_005872Re-query CCDS DB by Protein ID:NP_005863Link to BLAST:NP_005863.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005863.1 225 O75934 225 100% 0 0

Chromosomal Locations for CCDS 874.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 114568130 114568256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114569992 114570072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114570700 114570750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114575590 114575751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114576688 114576758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114581299 114581391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114581499 114581591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGCGGGCACAGGTTTGGTGGCTGGAGAGGTTGTGGTGGATGCGCTGCCGTATTTTGATCAAGGTTATG
AAGCCCCTGGTGTGCGGGAAGCGGCTGCAGCGCTGGTGGAGGAGGAAACTCGCAGATACCGACCTACTAA
GAACTACCTGAGCTACCTGACAGCCCCGGATTATTCTGCCTTTGAAACTGACATAATGAGAAATGAATTT
GAAAGACTGGCTGCTCGACAACCAATTGAATTGCTCAGTATGAAACGATATGAGCTTCCAGCCCCCTCCT
CTGGTCAAAAAAATGACATTACTGCATGGCAAGAATGTGTAAACAATTCTATGGCCCAGTTAGAGCATCA
AGCAGTTAGAATTGAGAATCTGGAACTAATGTCACAGCATGGATGTAATGCCTGGAAAGTATACAATGAA
AATCTAGTTCATATGATTGAACACGCACAGAAGGAACTTCAGAAGTTAAGAAAACATATTCAAGATTTAA
ACTGGCAGAGAAAGAACATGCAACTCACAGCTGGATCTAAATTGAGAGAAATGGAGTCAAATTGGGTATC
CCTGGTCAGTAAGAATTATGAGATTGAACGGACTATTGTTCAGCTAGAAAATGAAATCTATCAAATTAAG
CAGCAACATGGAGAGGCAAACAAAGAAAACATCCGGCAAGACTTCTGA

Translation (225 aa):
MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEF
ERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNE
NLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIK
QQHGEANKENIRQDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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