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Report for CCDS33221.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33221.2 Public Homo sapiens 2 SMYD5 24 110 108 CCDS HistoryNCBI Gene:10322Re-query CCDS DB by CCDS ID:33221.2See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33221.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389501.9 ENSP00000374152.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389501.9Link to Ensembl Protein Viewer:ENSP00000374152.4Re-query CCDS DB by Nucleotide ID:ENST00000389501Re-query CCDS DB by Protein ID:ENSP00000374152
Original member Current member NCBI NM_006062.3 NP_006053.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006062.3Link to Protein Sequence:NP_006053.2Re-query CCDS DB by Nucleotide ID:NM_006062Re-query CCDS DB by Protein ID:NP_006053Link to BLAST:NP_006053.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006053.2 418 Q6GMV2 418 100% 0 0

Chromosomal Locations for CCDS 33221.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73214267 73214362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73218861 73218969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73220051 73220190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73220661 73220782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73221165 73221234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73221826 73221930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73222755 73222817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73223036 73223106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73223426 73223532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73223947 73224003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73224866 73224960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73225631 73225701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73225796 73225946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCGGCCTCCATGTGCGACGTGTTCTCCTTCTGCGTGGGCGTGGCGGGCCGCGCGCGGGTCTCCGTGG
AAGTCCGTTTCGTGAGCAGCGCCAAGGGAAAGGGGCTGTTTGCCACACAGCTCATCCGGAAGGGGGAGAC
CATCTTCGTAGAACGGCCCCTGGTGGCTGCACAGTTTCTCTGGAATGCACTTTATCGCTACCGAGCCTGT
GACCACTGCCTTAGGGCACTAGAGAAGGCAGAGGAGAATGCCCAGAGGCTGACCGGGAAACCAGGCCAGG
TTCTGCCTCACCCAGAGCTGTGCACTGTGCGCAAAGACCTCCACCAGAACTGTCCCCATTGCCAAGTGAT
GTACTGCAGTGCAGAATGTCGGTTGGCAGCCACTGAGCAATACCACCAGGTCCTGTGCCCAGGCCCCTCC
CAGGATGACCCCTTGCATCCTCTCAATAAGCTTCAGGAGGCATGGAGGAGTATTCACTACCCACCTGAGA
CTGCAAGCATCATGTTGATGGCTAGGATGGTGGCCACAGTGAAGCAGGCGAAGGACAAGGACCGTTGGAT
CAGACTCTTTTCCCAGTTTTGTAACAAAACAGCCAATGAAGAGGAGGAAATTGTCCATAAACTTCTGGGA
GACAAATTCAAGGGCCAACTGGAACTTCTGCGGAGACTCTTCACAGAGGCCCTCTATGAGGAAGCAGTCA
GCCAGTGGTTCACTCCAGATGGATTCCGGTCTCTCTTTGCTCTTGTTGGGACCAATGGCCAAGGAATCGG
GACCAGCTCCCTAAGCCAGTGGGTCCATGCCTGTGACACTCTGGAGTTGAAGCCTCAGGACCGTGAGCAG
CTTGACGCCTTCATTGACCAGCTATACAAGGACATCGAGGCAGCAACTGGAGAGTTTCTTAACTGTGAAG
GATCTGGCCTCTTTGTGCTTCAGAGCTGCTGCAACCACAGTTGTGTGCCCAATGCAGAGACCTCCTTTCC
AGAAAACAACTTCCTTTTGCATGTCACTGCTCTGGAGGATATTAAGCCAGGAGAGGAAATTTGTATCAGC
TACTTGGACTGCTGTCAGCGGGAGCGCAGCCGCCACAGCCGCCACAAGATCCTCAGGGAGAACTATCTAT
TTGTCTGTTCCTGTCCCAAATGCCTGGCAGAGGCTGATGAACCCAATGTGACCTCAGAAGAGGAAGAGGA
AGAGGAGGAGGAGGAGGAAGGAGAGCCAGAAGATGCAGAGCTGGGGGATGAGATGACTGATGTGTGA

Translation (418 aa):
MAASMCDVFSFCVGVAGRARVSVEVRFVSSAKGKGLFATQLIRKGETIFVERPLVAAQFLWNALYRYRAC
DHCLRALEKAEENAQRLTGKPGQVLPHPELCTVRKDLHQNCPHCQVMYCSAECRLAATEQYHQVLCPGPS
QDDPLHPLNKLQEAWRSIHYPPETASIMLMARMVATVKQAKDKDRWIRLFSQFCNKTANEEEEIVHKLLG
DKFKGQLELLRRLFTEALYEEAVSQWFTPDGFRSLFALVGTNGQGIGTSSLSQWVHACDTLELKPQDREQ
LDAFIDQLYKDIEAATGEFLNCEGSGLFVLQSCCNHSCVPNAETSFPENNFLLHVTALEDIKPGEEICIS
YLDCCQRERSRHSRHKILRENYLFVCSCPKCLAEADEPNVTSEEEEEEEEEEEGEPEDAELGDEMTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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