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Report for CCDS11681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11681.1 Public Homo sapiens 17 ABCA9 24 110 108 CCDS HistoryNCBI Gene:10350Re-query CCDS DB by CCDS ID:11681.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11681.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340001.9 ENSP00000342216.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340001.9Link to Ensembl Protein Viewer:ENSP00000342216.3Re-query CCDS DB by Nucleotide ID:ENST00000340001Re-query CCDS DB by Protein ID:ENSP00000342216
Original member Current member NCBI NM_080283.4 NP_525022.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080283.4Link to Protein Sequence:NP_525022.2Re-query CCDS DB by Nucleotide ID:NM_080283Re-query CCDS DB by Protein ID:NP_525022Link to BLAST:NP_525022.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_525022.2 1624 Q8IUA7-1 1624 100% 0 0

Chromosomal Locations for CCDS 11681.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 68975915 68976013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68976135 68976190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68982562 68982641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68983709 68983849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68984056 68984175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68984885 68984979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68985053 68985128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68986164 68986324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68989027 68989118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68989813 68989930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68990837 68990957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68992175 68992266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68993016 68993084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68995895 68996014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69007759 69007872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69008062 69008235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69011976 69012083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69016253 69016390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69017656 69017789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69018413 69018579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69020388 69020586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69021742 69021861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69024214 69024353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69026377 69026467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69026976 69027114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69027330 69027449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69027640 69027815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69028535 69028645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69029169 69029227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69032108 69032276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69033726 69033873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69035246 69035431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69035660 69035801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69043489 69043715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69044497 69044600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69045172 69045336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69049283 69049490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 69051031 69051126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4875 nt):
ATGAGCAAGAGACGCATGAGCGTGGGTCAGCAAACATGGGCTCTTCTCTGCAAGAACTGTCTCAAAAAAT
GGAGAATGAAAAGACAGACCTTGTTGGAATGGCTCTTTTCATTTCTTCTGGTACTGTTTCTGTACCTATT
TTTCTCCAATTTACATCAAGTTCATGACACTCCTCAAATGTCTTCAATGGATCTGGGACGTGTAGATAGT
TTTAATGATACTAATTATGTTATTGCATTTGCACCTGAATCCAAAACTACCCAAGAGATAATGAACAAAG
TGGCTTCAGCCCCATTCCTAAAAGGAAGAACAATCATGGGGTGGCCTGATGAAAAAAGCATGGATGAATT
GGATTTGAACTATTCAATAGACGCAGTGAGAGTCATCTTTACTGATACCTTCTCCTACCATTTGAAGTTT
TCTTGGGGACATAGAATCCCCATGATGAAAGAGCACAGAGACCATTCAGCTCACTGTCAAGCAGTGAATG
AAAAAATGAAGTGTGAAGGTTCAGAGTTCTGGGAGAAAGGCTTTGTAGCTTTTCAAGCTGCCATTAATGC
TGCTATCATAGAAATCGCAACAAATCATTCAGTGATGGAACAGCTGATGTCAGTTACTGGTGTACATATG
AAGATATTACCTTTTGTTGCCCAAGGAGGAGTTGCAACTGATTTTTTCATTTTCTTTTGCATTATTTCTT
TTTCTACATTTATATACTATGTATCAGTCAATGTTACACAAGAAAGACAATACATTACGTCATTGATGAC
AATGATGGGACTCCGAGAGTCAGCATTCTGGCTTTCCTGGGGTTTGATGTATGCTGGCTTCATCCTTATC
ATGGCCACTTTAATGGCTCTTATTGTAAAATCTGCACAAATTGTCGTCCTGACTGGTTTTGTGATGGTCT
TCACCCTCTTTCTCCTCTATGGCCTGTCTTTGATAACTTTAGCTTTCCTGATGAGTGTGTTGATAAAGAA
ACCTTTCCTTACGGGCTTGGTTGTGTTTCTCCTTATTGTCTTTTGGGGGATCCTGGGATTCCCAGCATTG
TATACACGTCTTCCTGCATTTTTGGAATGGACTTTGTGTCTTCTTAGCCCCTTTGCCTTCACTGTTGGGA
TGGCCCAGCTTATACATTTGGACTATGATGTGAATTCTAATGCCCACTTGGATTCTTCACAAAATCCATA
CCTCATAATAGCTACTCTTTTCATGTTGGTTTTTGACACCCTTCTGTATTTGGTATTGACATTATATTTT
GACAAAATTTTGCCCGCTGAATATGGACATCGATGTTCTCCCTTGTTTTTCCTGAAATCCTGTTTTTGGT
TTCAACACGGAAGGGCTAATCATGTGGTCCTTGAGAATGAAACAGATTCTGATCCTACACCTAATGACTG
TTTTGAACCAGTGTCTCCAGAATTCTGTGGGAAAGAAGCCATCAGAATCAAAAATCTTAAAAAAGAATAT
GCAGGGAAGTGTGAGAGAGTAGAAGCTTTGAAAGGTGTGGTGTTTGACATATATGAAGGCCAGATCACTG
CCCTCCTTGGTCACAGTGGAGCTGGAAAAACTACCCTGTTAAACATACTTAGTGGGTTGTCAGTTCCAAC
ATCAGGTTCAGTCACTGTCTATAATCACACACTTTCAAGAATGGCTGATATAGAAAATATCAGCAAGTTC
ACTGGATTTTGTCCACAATCCAATGTGCAATTTGGATTTCTCACTGTGAAAGAAAACCTCAGGCTGTTTG
CTAAAATAAAAGGGATTTTGCCACATGAAGTGGAGAAAGAGGTACAACGAGTTGTACAGGAATTAGAAAT
GGAAAATATTCAAGACATCCTTGCTCAAAACTTAAGTGGTGGACAAAATAGGAAACTAACTTTTGGGATT
GCCATTTTAGGAGATCCTCAAGTTTTGCTATTGGATGAACCGACTGCTGGATTGGATCCTCTTTCAAGGC
ACCGAATATGGAATCTCCTGAAAGAGGGGAAATCAGACAGAGTAATTCTCTTCAGCACCCAGTTTATAGA
TGAGGCTGACATTCTGGCGGACAGGAAGGTGTTCATATCCAATGGGAAGCTGAAGTGTGCAGGCTCTTCT
CTGTTCCTTAAGAAGAAATGGGGCATAGGCTACCATTTAAGTTTGCATCTGAATGAAAGGTGTGATCCAG
AGAGTATAACATCACTGGTTAAGCAGCACATCTCTGATGCCAAATTGACAGCACAAAGTGAAGAAAAACT
TGTATATATTTTGCCTTTGGAAAGGACAAACAAATTTCCAGAACTTTACAGGGATCTTGATAGATGTTCT
AACCAAGGCATTGAGGATTATGGTGTTTCCATAACAACTTTGAATGAGGTGTTTCTGAAATTAGAAGGAA
AATCAACTATTGATGAATCAGATATTGGAATTTGGGGACAATTACAAACTGATGGGGCAAAAGATATAGG
AAGCCTTGTTGAGCTGGAACAAGTTTTGTCTTCCTTCCACGAAACAAGGAAAACAATCAGTGGCGTGGCG
CTCTGGAGGCAGCAGGTCTGTGCAATAGCAAAAGTTCGCTTCCTAAAGTTAAAGAAAGAAAGAAAAAGCC
TGTGGACTATATTATTGCTTTTTGGTATTAGCTTTATCCCTCAACTTTTGGAACATCTATTCTACGAGTC
ATATCAGAAAAGTTACCCGTGGGAACTGTCTCCAAATACATACTTCCTCTCACCAGGACAACAACCACAG
GATCCTCTGACCCATTTACTGGTCATCAATAAGACAGGGTCAACCATTGATAACTTTTTACATTCACTGA
GGCGACAGAACATAGCTATAGAAGTGGATGCCTTTGGAACTAGAAATGGCACAGATGACCCATCTTACAA
TGGTGCTATCATTGTGTCAGGTGATGAAAAGGATCACAGATTTTCAATAGCATGTAATACAAAACGGCTG
AATTGCTTTCCTGTCCTCCTGGATGTCATTAGCAATGGACTACTTGGAATTTTTAATTCGTCAGAACACA
TTCAGACTGACAGAAGCACATTTTTTGAAGAGCATATGGATTATGAGTATGGGTACCGAAGTAACACCTT
CTTCTGGATACCGATGGCAGCCTCTTTCACTCCATACATTGCAATGAGCAGCATTGGTGACTACAAAAAA
AAAGCTCATTCCCAGCTACGGATTTCAGGCCTCTACCCTTCTGCATACTGGTTTGGCCAAGCACTGGTGG
ATGTTTCCCTGTACTTTTTGATCCTCCTGCTAATGCAAATAATGGATTATATTTTTAGCCCAGAGGAGAT
TATATTTATAATTCAAAACCTGTTAATTCAAATCCTGTGTAGTATTGGCTATGTCTCATCTCTTGTTTTC
TTGACATATGTGATTTCATTCATTTTTCGCAATGGGAGAAAAAATAGTGGCATTTGGTCATTTTTCTTCT
TAATTGTGGTCATCTTCTCGATAGTTGCTACTGATCTAAATGAATATGGATTTCTAGGGCTATTTTTTGG
CACCATGTTAATACCTCCCTTCACATTGATTGGCTCTCTATTCATTTTTTCTGAGATTTCTCCTGATTCC
ATGGATTACTTAGGAGCTTCAGAATCTGAAATTGTATACCTGGCACTGCTAATACCTTACCTTCATTTTC
TCATTTTTCTTTTCATTCTGCGATGCCTAGAAATGAACTGCAGGAAGAAACTAATGAGAAAGGATCCTGT
GTTCAGAATTTCTCCAAGAAGCAACGCTATTTTTCCAAACCCAGAAGAGCCTGAAGGAGAGGAGGAAGAT
ATCCAGATGGAAAGAATGAGAACAGTGAATGCTATGGCTGTGCGAGACTTTGATGAGACACCCGTCATCA
TTGCCAGCTGTCTACGGAAGGAATATGCAGGCAAAAAGAAAAATTGCTTTTCTAAAAGGAAGAAAAAAAT
TGCCACAAGAAATGTCTCTTTTTGTGTTAAAAAAGGTGAAGTTATAGGACTGTTAGGACACAATGGAGCT
GGTAAAAGTACAACTATTAAGATGATAACTGGAGACACAAAACCAACTGCAGGACAGGTGATTTTGAAAG
GGAGCGGTGGAGGGGAACCCCTGGGCTTCCTGGGGTACTGCCCTCAGGAGAATGCGCTGTGGCCCAACCT
GACAGTGAGGCAGCACCTGGAGGTGTACGCTGCCGTGAAAGGTCTCAGGAAAGGGGACGCAATGATCGCC
ATCACACGGTTAGTGGATGCGCTCAAGCTGCAGGACCAGCTGAAGGCTCCCGTGAAGACCTTGTCAGAGG
GAATAAAGCGAAAGCTGTGCTTTGTGCTGAGCATCCTGGGGAACCCGTCAGTGGTGCTTCTGGATGAGCC
GTCGACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTGGCAGGTGATTCGGGCCACCTTTAGAAACACG
GAGAGGGGCGCCCTCCTGACCACCCACTACATGGCAGAGGCTGAGGCGGTGTGTGACCGAGTGGCCATCA
TGGTGTCAGGAAGGCTGAGATGTATTGGTTCCATCCAACACCTGAAAAGCAAATTTGGCAAAGACTACCT
GCTGGAGATGAAGCTGAAGAACCTGGCACAAATGGAGCCCCTCCATGCAGAGATCCTGAGGCTTTTCCCC
CAGGCTGCTCAGCAGGAAAGGTTCTCCTCCCTGATGGTCTATAAGTTGCCTGTTGAGGATGTGCGACCTT
TATCACAGGCTTTCTTCAAATTAGAGATAGTTAAACAGAGTTTCGACCTGGAGGAGTACAGCCTCTCACA
GTCTACCCTGGAGCAGGTTTTCCTGGAGCTCTCCAAGGAGCAGGAGCTGGGTGATCTTGAAGAGGACTTT
GATCCCTCGGTGAAGTGGAAACTCCTCCTGCAGGAAGAGCCTTAA

Translation (1624 aa):
MSKRRMSVGQQTWALLCKNCLKKWRMKRQTLLEWLFSFLLVLFLYLFFSNLHQVHDTPQMSSMDLGRVDS
FNDTNYVIAFAPESKTTQEIMNKVASAPFLKGRTIMGWPDEKSMDELDLNYSIDAVRVIFTDTFSYHLKF
SWGHRIPMMKEHRDHSAHCQAVNEKMKCEGSEFWEKGFVAFQAAINAAIIEIATNHSVMEQLMSVTGVHM
KILPFVAQGGVATDFFIFFCIISFSTFIYYVSVNVTQERQYITSLMTMMGLRESAFWLSWGLMYAGFILI
MATLMALIVKSAQIVVLTGFVMVFTLFLLYGLSLITLAFLMSVLIKKPFLTGLVVFLLIVFWGILGFPAL
YTRLPAFLEWTLCLLSPFAFTVGMAQLIHLDYDVNSNAHLDSSQNPYLIIATLFMLVFDTLLYLVLTLYF
DKILPAEYGHRCSPLFFLKSCFWFQHGRANHVVLENETDSDPTPNDCFEPVSPEFCGKEAIRIKNLKKEY
AGKCERVEALKGVVFDIYEGQITALLGHSGAGKTTLLNILSGLSVPTSGSVTVYNHTLSRMADIENISKF
TGFCPQSNVQFGFLTVKENLRLFAKIKGILPHEVEKEVQRVVQELEMENIQDILAQNLSGGQNRKLTFGI
AILGDPQVLLLDEPTAGLDPLSRHRIWNLLKEGKSDRVILFSTQFIDEADILADRKVFISNGKLKCAGSS
LFLKKKWGIGYHLSLHLNERCDPESITSLVKQHISDAKLTAQSEEKLVYILPLERTNKFPELYRDLDRCS
NQGIEDYGVSITTLNEVFLKLEGKSTIDESDIGIWGQLQTDGAKDIGSLVELEQVLSSFHETRKTISGVA
LWRQQVCAIAKVRFLKLKKERKSLWTILLLFGISFIPQLLEHLFYESYQKSYPWELSPNTYFLSPGQQPQ
DPLTHLLVINKTGSTIDNFLHSLRRQNIAIEVDAFGTRNGTDDPSYNGAIIVSGDEKDHRFSIACNTKRL
NCFPVLLDVISNGLLGIFNSSEHIQTDRSTFFEEHMDYEYGYRSNTFFWIPMAASFTPYIAMSSIGDYKK
KAHSQLRISGLYPSAYWFGQALVDVSLYFLILLLMQIMDYIFSPEEIIFIIQNLLIQILCSIGYVSSLVF
LTYVISFIFRNGRKNSGIWSFFFLIVVIFSIVATDLNEYGFLGLFFGTMLIPPFTLIGSLFIFSEISPDS
MDYLGASESEIVYLALLIPYLHFLIFLFILRCLEMNCRKKLMRKDPVFRISPRSNAIFPNPEEPEGEEED
IQMERMRTVNAMAVRDFDETPVIIASCLRKEYAGKKKNCFSKRKKKIATRNVSFCVKKGEVIGLLGHNGA
GKSTTIKMITGDTKPTAGQVILKGSGGGEPLGFLGYCPQENALWPNLTVRQHLEVYAAVKGLRKGDAMIA
ITRLVDALKLQDQLKAPVKTLSEGIKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQVIRATFRNT
ERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKLKNLAQMEPLHAEILRLFP
QAAQQERFSSLMVYKLPVEDVRPLSQAFFKLEIVKQSFDLEEYSLSQSTLEQVFLELSKEQELGDLEEDF
DPSVKWKLLLQEEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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