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Report for CCDS11831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11831.1 Public Homo sapiens 18 MYL12B 24 110 108 CCDS HistoryNCBI Gene:103910Re-query CCDS DB by CCDS ID:11831.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11831.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237500.10 ENSP00000237500.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237500.10Link to Ensembl Protein Viewer:ENSP00000237500.5Re-query CCDS DB by Nucleotide ID:ENST00000237500Re-query CCDS DB by Protein ID:ENSP00000237500
Original member Current member EBI ENST00000400175.9 ENSP00000383037.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400175.9Link to Ensembl Protein Viewer:ENSP00000383037.5Re-query CCDS DB by Nucleotide ID:ENST00000400175Re-query CCDS DB by Protein ID:ENSP00000383037
Original member Current member EBI ENST00000581193.5 ENSP00000463559.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000581193.5Link to Ensembl Protein Viewer:ENSP00000463559.1Re-query CCDS DB by Nucleotide ID:ENST00000581193Re-query CCDS DB by Protein ID:ENSP00000463559
Original member Current member EBI ENST00000584539.1 ENSP00000464464.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000584539.1Link to Ensembl Protein Viewer:ENSP00000464464.1Re-query CCDS DB by Nucleotide ID:ENST00000584539Re-query CCDS DB by Protein ID:ENSP00000464464
Original member Current member EBI ENST00000648965.1 ENSP00000496809.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648965.1Link to Ensembl Protein Viewer:ENSP00000496809.1Re-query CCDS DB by Nucleotide ID:ENST00000648965Re-query CCDS DB by Protein ID:ENSP00000496809
Original member Current member NCBI NM_001144944.1 NP_001138416.1 Accepted alive Link to Nucleotide Sequence:NM_001144944.1Link to Protein Sequence:NP_001138416.1Re-query CCDS DB by Nucleotide ID:NM_001144944Re-query CCDS DB by Protein ID:NP_001138416Link to BLAST:NP_001138416.1
Original member Current member NCBI NM_001144945.1 NP_001138417.1 Accepted alive Link to Nucleotide Sequence:NM_001144945.1Link to Protein Sequence:NP_001138417.1Re-query CCDS DB by Nucleotide ID:NM_001144945Re-query CCDS DB by Protein ID:NP_001138417Link to BLAST:NP_001138417.1
Original member Current member NCBI NM_033546.4 NP_291024.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033546.4Link to Protein Sequence:NP_291024.1Re-query CCDS DB by Nucleotide ID:NM_033546Re-query CCDS DB by Protein ID:NP_291024Link to BLAST:NP_291024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138416.1 172 O14950 172 100% 0 0
NP_001138417.1 172 O14950 172 100% 0 0
NP_291024.1 172 O14950 172 100% 0 0

Chromosomal Locations for CCDS 11831.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3272899 3273082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3277253 3277414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3277765 3277937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGTCGAGCAAAAAGGCAAAGACCAAGACCACCAAGAAGCGCCCTCAGCGTGCAACATCCAATGTGTTTG
CCATGTTTGACCAGTCACAGATTCAGGAGTTCAAAGAGGCCTTCAACATGATTGATCAGAACAGAGATGG
CTTCATCGACAAGGAAGATTTGCATGATATGCTTGCTTCTCTAGGGAAGAATCCCACTGATGCATACCTT
GATGCCATGATGAATGAGGCCCCAGGGCCCATCAATTTCACCATGTTCCTGACCATGTTTGGTGAGAAGT
TAAATGGCACAGATCCTGAAGATGTCATCAGAAACGCCTTTGCTTGCTTTGATGAAGAAGCAACAGGCAC
CATTCAGGAAGATTACCTAAGAGAGCTGCTGACAACCATGGGGGATCGGTTTACAGATGAGGAAGTGGAT
GAGCTGTACAGAGAAGCACCTATTGACAAAAAGGGGAATTTCAATTACATCGAGTTCACACGCATCCTGA
AACATGGAGCCAAAGACAAAGATGACTGA

Translation (172 aa):
MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYL
DAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVD
ELYREAPIDKKGNFNYIEFTRILKHGAKDKDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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