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Report for CCDS3888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3888.1 Public Homo sapiens 5 BASP1 24 110 108 CCDS HistoryNCBI Gene:10409Re-query CCDS DB by CCDS ID:3888.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3888.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322611.4 ENSP00000319281.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322611.4Link to Ensembl Protein Viewer:ENSP00000319281.3Re-query CCDS DB by Nucleotide ID:ENST00000322611Re-query CCDS DB by Protein ID:ENSP00000319281
Original member Current member EBI ENST00000616743.1 ENSP00000482066.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616743.1Link to Ensembl Protein Viewer:ENSP00000482066.1Re-query CCDS DB by Nucleotide ID:ENST00000616743Re-query CCDS DB by Protein ID:ENSP00000482066
Original member Current member NCBI NM_001271606.2 NP_001258535.1 Accepted alive Link to Nucleotide Sequence:NM_001271606.2Link to Protein Sequence:NP_001258535.1Re-query CCDS DB by Nucleotide ID:NM_001271606Re-query CCDS DB by Protein ID:NP_001258535Link to BLAST:NP_001258535.1
Original member Current member NCBI NM_006317.5 NP_006308.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006317.5Link to Protein Sequence:NP_006308.3Re-query CCDS DB by Nucleotide ID:NM_006317Re-query CCDS DB by Protein ID:NP_006308Link to BLAST:NP_006308.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258535.1 227 P80723-1 227 100% 0 0
NP_006308.3 227 P80723-1 227 100% 0 0

Chromosomal Locations for CCDS 3888.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 17275217 17275900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGGAGGCAAGCTCAGCAAGAAGAAGAAGGGCTACAATGTGAACGACGAGAAAGCCAAGGAGAAAGACA
AGAAGGCCGAGGGCGCGGCGACGGAAGAGGAGGGGACCCCGAAGGAGAGTGAGCCCCAGGCGGCCGCAGA
GCCCGCCGAGGCCAAGGAGGGCAAGGAGAAGCCCGACCAGGACGCCGAGGGCAAGGCCGAGGAGAAGGAG
GGCGAGAAGGACGCGGCGGCTGCCAAGGAGGAGGCCCCGAAGGCGGAGCCCGAGAAGACGGAGGGCGCGG
CAGAGGCCAAGGCTGAGCCCCCGAAGGCGCCCGAGCAGGAGCAGGCGGCCCCCGGCCCCGCTGCGGGCGG
CGAGGCCCCCAAAGCTGCTGAGGCCGCCGCGGCCCCGGCCGAGAGCGCGGCCCCTGCCGCCGGGGAGGAG
CCCAGCAAGGAGGAAGGGGAACCCAAAAAGACTGAGGCGCCCGCAGCTCCTGCCGCCCAGGAGACCAAAA
GTGACGGGGCCCCAGCTTCAGACTCAAAACCCGGCAGCTCGGAGGCTGCCCCCTCTTCCAAGGAGACCCC
CGCAGCCACGGAAGCGCCTAGTTCCACACCCAAGGCCCAGGGCCCCGCAGCCTCTGCAGAAGAGCCCAAG
CCGGTGGAGGCCCCGGCAGCTAATTCCGACCAAACCGTAACCGTGAAAGAGTGA

Translation (227 aa):
MGGKLSKKKKGYNVNDEKAKEKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKE
GEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEE
PSKEEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPK
PVEAPAANSDQTVTVKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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