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Report for CCDS42340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42340.1 Public Homo sapiens 17 KLHL10 24 110 108 CCDS HistoryNCBI Gene:317719Re-query CCDS DB by CCDS ID:42340.1Re-query CCDS DB by GeneID:317719See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293303.5 ENSP00000293303.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293303.5Link to Ensembl Protein Viewer:ENSP00000293303.4Re-query CCDS DB by Nucleotide ID:ENST00000293303Re-query CCDS DB by Protein ID:ENSP00000293303
Original member Current member NCBI NM_001329595.1 NP_001316524.1 Accepted alive Link to Nucleotide Sequence:NM_001329595.1Link to Protein Sequence:NP_001316524.1Re-query CCDS DB by Nucleotide ID:NM_001329595Re-query CCDS DB by Protein ID:NP_001316524Link to BLAST:NP_001316524.1
Original member Current member NCBI NM_152467.5 NP_689680.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152467.5Link to Protein Sequence:NP_689680.2Re-query CCDS DB by Nucleotide ID:NM_152467Re-query CCDS DB by Protein ID:NP_689680Link to BLAST:NP_689680.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316524.1 608 Q6JEL2 608 100% 0 0
NP_689680.2 608 Q6JEL2 608 100% 0 0

Chromosomal Locations for CCDS 42340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41837933 41838126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41841823 41842312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41845126 41845743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41847261 41847410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41847933 41848307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGAGATGGAGAGCGCGGCGGCCTCCACACGTTTCCACCAGCCTCACATGGAGAGGAAGATGAGTGCGA
TGGCCTGTGAGATCTTCAACGAGCTTAGACTAGAGGGCAAGCTCTGCGACGTGGTCATCAAGGTCAATGG
CTTTGAGTTCAGTGCCCATAAGAACATCCTCTGTAGCTGCAGTTCCTACTTTAGAGCTTTGTTTACAAGT
GGCTGGAACAACACTGAAAAGAAGGTATACAACATCCCTGGCATTTCTCCCGACATGATGAAGCTAATCA
TTGAGTATGCATACACCCGGACCGTGCCTATCACACCGGACAATGTGGAGAAACTGCTTGCTGCTGCAGA
CCAGTTTAACATCATGGGTATCGTCAGGGGTTGCTGCGAGTTCCTCAAGTCAGAGCTGTGCTTGGATAAT
TGTATCGGCATCTGTAAGTTCACGGACTACTACTACTGTCCTGAGCTGAGGCAGAAGGCCTACATGTTCA
TACTGCACAACTTTGAGGAGATGGTGAAAGTCTCGGCAGAATTTTTAGAGCTCTCGGTCACTGAACTTAA
GGATATCATTGAGAAAGATGAGCTCAATGTCAAACAGGAAGATGCTGTATTTGAGGCCATTTTAAAGTGG
ATTTCTCATGACCCCCAAAATAGAAAGCAGCACATTTCAATTTTGCTTCCTAAGGTTCGCCTGGCCCTAA
TGCATGCTGAGTACTTCATGAACAATGTTAAGATGAATGACTATGTCAAAGACAGTGAGGAATGCAAACC
AGTCATCATTAATGCCCTAAAGGCCATGTATGACCTCAACATGAATGGACCCTCTAATTCTGATTTCACC
AACCCACTCACCAGACCACGCTTGCCCTATGCCATCCTCTTTGCAATTGGTGGCTGGAGTGGTGGGAGCC
CCACCAATGCCATTGAGGCATATGACGCTCGGGCAGACAGATGGGTGAATGTTACTTGTGAGGAAGAGAG
TCCCCGTGCCTACCATGGGGCAGCCTATTTGAAAGGCTATGTGTATATCATTGGGGGGTTTGATAGTGTA
GACTATTTCAATAGTGTTAAGCGTTTTGACCCAGTCAAGAAAACTTGGCATCAGGTGGCCCCGATGCACT
CCAGACGTTGCTATGTCAGTGTGACAGTCCTCGGCAATTTTATTTATGCCATGGGAGGATTTGATGGCTA
CGTGCGTCTAAACACTGCTGAACGTTATGAGCCAGAGACCAATCAATGGACACTCATCGCCCCCATGCAC
GAACAGAGGAGTGATGCAAGCGCCACAACACTTTATGGGAAGGTCTACATATGTGGTGGGTTTAATGGAA
ACGAGTGCCTGTTCACAGCAGAAGTGTATAACACTGAAAGTAATCAGTGGACAGTCATAGCACCCATGAG
AAGCAGGAGGAGTGGAATAGGCGTGATTGCTTATGGAGAACATGTATATGCGGTAGGTGGCTTTGATGGA
GCTAATCGACTTAGGAGTGCCGAAGCCTACAGCCCTGTGGCTAACACTTGGCGCACAATCCCCACTATGT
TTAATCCTCGTAGCAATTTTGGCATCGAGGTGGTGGATGACCTCTTGTTTGTGGTGGGTGGCTTTAATGG
TTTTACCACCACCTTTAATGTTGAGTGCTATGATGAAAAGACCGATGAGTGGTATGATGCTCATGACATG
AGTATATACCGCAGTGCTCTGAGCTGCTGTGTAGTACCAGGGCTGGCCAATGTTGAGGAATATGCAGCTA
GACGGGACAACTTCCCAGGATTAGCACTGCGAGATGAAGTAAAATATTCTGCTTCGACAAGTACCCTACC
TGTATGA

Translation (608 aa):
MEMESAAASTRFHQPHMERKMSAMACEIFNELRLEGKLCDVVIKVNGFEFSAHKNILCSCSSYFRALFTS
GWNNTEKKVYNIPGISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDN
CIGICKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVFEAILKW
ISHDPQNRKQHISILLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDLNMNGPSNSDFT
NPLTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVTCEEESPRAYHGAAYLKGYVYIIGGFDSV
DYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLGNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMH
EQRSDASATTLYGKVYICGGFNGNECLFTAEVYNTESNQWTVIAPMRSRRSGIGVIAYGEHVYAVGGFDG
ANRLRSAEAYSPVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDM
SIYRSALSCCVVPGLANVEEYAARRDNFPGLALRDEVKYSASTSTLPV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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