NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14424.1 Public Homo sapiens X CDX4 24 110 108 CCDS HistoryNCBI Gene:1046Re-query CCDS DB by CCDS ID:14424.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14424.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373514.3 ENSP00000362613.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373514.3Link to Ensembl Protein Viewer:ENSP00000362613.1Re-query CCDS DB by Nucleotide ID:ENST00000373514Re-query CCDS DB by Protein ID:ENSP00000362613
Original member Current member NCBI NM_005193.2 NP_005184.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005193.2Link to Protein Sequence:NP_005184.1Re-query CCDS DB by Nucleotide ID:NM_005193Re-query CCDS DB by Protein ID:NP_005184Link to BLAST:NP_005184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005184.1 284 O14627 284 100% 0 0

Chromosomal Locations for CCDS 14424.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73447254 73447755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73453517 73453662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73454379 73454585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGTACGGAAGCTGTCTTTTGGAGAAAGAAGCAGGCATGTACCCGGGCACTCTCATGAGCCCTGGGGGCG
ACGGCACAGCTGGGACAGGCGGCACAGGGGGCGGTGGGAGTCCGATGCCAGCCTCCAATTTCGCTGCGGC
ACCGGCTTTCTCGCACTATATGGGGTATCCTCATATGCCCAGCATGGATCCTCACTGGCCGTCTCTGGGA
GTCTGGGGCTCACCCTACAGTCCCCCGCGAGAAGACTGGAGCGTGTATCCTGGGCCGTCTAGTACAATGG
GCACAGTGCCGGTGAACGACGTGACCTCTAGCCCCGCCGCTTTCTGCTCGACCGACTACAGCAACTTGGG
CCCTGTGGGCGGTGGAACTAGCGGCAGCAGCCTACCAGGCCAGGCTGGCGGGTCGCTTGTCCCGACGGAC
GCAGGCGCCGCCAAGGCCAGTTCCCCCAGCAGGAGCCGCCACAGCCCCTATGCATGGATGCGCAAGACGG
TGCAGGTGACGGGGAAAACCAGGACAAAAGAAAAGTATCGTGTAGTTTACACTGATCATCAAAGATTGGA
GCTGGAAAAGGAATTCCATTGCAATAGATATATCACCATCCAGAGAAAATCAGAGCTGGCAGTTAACCTG
GGCCTTTCCGAGAGACAGGTGAAAATCTGGTTTCAGAATCGCAGAGCCAAGGAGAGAAAGATGATCAAAA
AGAAAATCTCCCAGTTTGAGAATAGTGGAGGCTCGGTGCAAAGTGACTCTGACTCCATCAGCCCTGGGGA
ACTACCTAACACTTTTTTCACCACACCATCTGCTGTTCGTGGATTTCAACCTATTGAGATACAGCAGGTT
ATAGTCTCCGAATGA

Translation (284 aa):
MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMPSMDPHWPSLG
VWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTD
AGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNL
GLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQV
IVSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH