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Report for CCDS27134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27134.1 Public Mus musculus 14 Khnyn 23 108 98 CCDS HistoryNCBI Gene:219094Re-query CCDS DB by CCDS ID:27134.1Re-query CCDS DB by GeneID:219094See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27134.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022831.4 ENSMUSP00000022831.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022831.4Link to Ensembl Protein Viewer:ENSMUSP00000022831.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022831Re-query CCDS DB by Protein ID:ENSMUSP00000022831
Original member Current member NCBI NM_027143.3 NP_081419.1 Accepted alive Link to Nucleotide Sequence:NM_027143.3Link to Protein Sequence:NP_081419.1Re-query CCDS DB by Nucleotide ID:NM_027143Re-query CCDS DB by Protein ID:NP_081419Link to BLAST:NP_081419.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081419.1 671 Q80U38 671 100% 0 0

Chromosomal Locations for CCDS 27134.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55885791 55885991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55886492 55887618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55887714 55887844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55887921 55888017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55893992 55894099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55894287 55894388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55894863 55895112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGTCTACTTGGGGGTTTGCCTCCCCGACTCCCGACCGCTTTGCGGTGTCTGCGGAGGCCGAGGACAAGG
TTCGGGAGCAGCAGACTCGCTTGGAGCGTATCTTCAACGTGGGAATGAGCGTCCTCTCCAAAGACTGCCC
AGAGAATCCTCATATCTGGTTGCAGCTTGAGGGCCCCAAGGAGAACGTCTGCAGAGCCAAGGAATACCTG
AAGGGGCTCTGCAGCCCAGAACTACAGAGTGAGATCCACTACCCACCCAGACTGCACTGCATCTTTCTGG
GAGCCCACGGTTTCTTCCTTGACTGCCTGGCCTGGAGCACATCTGCCCACCTGGTGCCTCTGCTTCCTGG
CTCTCTGATGATCAGTGGCCTAACCGAGGCGTTTGTGATGGCCCAGAGCCGGGTGGAGGAGTTAGTGCAA
CGGCTGAGCTGGGACCTTCAGCTACAGTCTTGTCCCGGAGCCCCTGACAATGGCGGAGTGCTGAGAGACT
TCTCTGCCCTGCTGCAGACTAGGGAGGATGCCTACACAGAGGCCCTGCTGCGGCTGCCCCTGGCCGTGCA
GGAGGAGCTCCTAAGCCTGGTGCAGGAGGCATCTAGAGGGCAGGGTCCATCTCGTGAGGTGGGGAGCTCA
GGCCTGTTGAGTCCTCAGTTCCAGGGAGTCAGGGCTCCCTTGAATGAAGGCAGGGAATTCGTAGGCACCA
GAGTGGCAGGGTCGGGAAAGTCGCCAGCAGTAAGAGGACAAAGTCATACTGTGGAGAAGGAGGAAAGGAA
ACAGGATGCTGTCAGGGACATGGGTTCAGGGCGGAAGGAGCTGTCTGGGGAAGAGGTCTGGGAGCCTGGA
GTGGCTTACAGGTCACAGCTAGCAGGTGGAGGAGCAGAGGAGGTGGCACCCTTGAAGGGAAAGGCCTCGG
GGAAACAGGAGGTTCCTCAGCAAAGAGGAGGGTTCAGTGTGCAGGGTGAACCTTCAGGTGCGCATGTGCC
CTGTCAGAGGGCAGCTCCAATCCGGGGAGCCTCTCTCCTCCAGCGGCTCCACAATGGGAGCGCCTCACCT
CCGAGAGTGCCTAGCCCTCCGCCCGCGCCGGAACCCCCATGGCCCTGTGGAGACCGAGACCGAGATCGAG
ATCGGGGAGACAGGGGAGACAAGCAGCAGGCTGGAGCTCGAGGCCGAGGGTCTCCGTGGAAGCGAGGCAC
TCGTGGGGGCAACTTGGTGACTGGCACGCAGCGTTTCCAGGAAGCCTTACAGGATCCTTTCACCCTGTGC
CTTGCCAATGTGCCTGGCCAGCCAGATCTCCGTCACATTGTCATTGATGGCAGCAACGTGGCCATGGTGC
ACGGACTCCAGCATTACTTTTCCAGTCGGGGTATTGCTCTCGCTGTACAGTACTTCTGGGACCGTGGCCA
CCGTGACATAACCGTCTTTGTGCCTCAGTGGCGCTTCAGTAAAGATTCCAAGGTCAGAGAGAGTCACTTC
CTGCAGAAGTTGTATTCCCTGAGTCTGCTTTCCCTGACACCCTCACGAGTCATGGATGGCAAGAGGATTT
CTTCTTATGATGACAGGTTCATGGTGAAGCTGGCTGAAGAAACGGATGGGATCATTGTCTCCAATGACCA
GTTCCGGGATCTGGCTGAGGAGTCTGACAAGTGGATGGCGATCATCAGAGAGCGCCTGCTGCCCTTCACC
TTTGTGGGGAACCTCTTCATGGTCCCAGATGACCCACTGGGACGAAATGGCCCCACCCTGGATGAGTTCC
TGAAGAAGCCAGTCAGGAAGCAGGGTTCTTCTAAGACTCAGCAGCCCTCTAAAGGCTCCACAGAGCAGGC
TAATCAGCAGCAGGGGAAGGACGCGGACAGGAGCAATGGTGGCATTCGGAAGACCCGGGAGACAGAGCGG
CTGCGGCGCCAGCTGCTCGAAGTGTTTTGGGGTCAGGACCACAAGGTGGACTTCATCCTGCAGCGGGAAC
CGTACTGCCGGGATATTAACCAGCTTTCTGAGGCCCTGCTGAGTCTCAACTTCTGA

Translation (671 aa):
MSTWGFASPTPDRFAVSAEAEDKVREQQTRLERIFNVGMSVLSKDCPENPHIWLQLEGPKENVCRAKEYL
KGLCSPELQSEIHYPPRLHCIFLGAHGFFLDCLAWSTSAHLVPLLPGSLMISGLTEAFVMAQSRVEELVQ
RLSWDLQLQSCPGAPDNGGVLRDFSALLQTREDAYTEALLRLPLAVQEELLSLVQEASRGQGPSREVGSS
GLLSPQFQGVRAPLNEGREFVGTRVAGSGKSPAVRGQSHTVEKEERKQDAVRDMGSGRKELSGEEVWEPG
VAYRSQLAGGGAEEVAPLKGKASGKQEVPQQRGGFSVQGEPSGAHVPCQRAAPIRGASLLQRLHNGSASP
PRVPSPPPAPEPPWPCGDRDRDRDRGDRGDKQQAGARGRGSPWKRGTRGGNLVTGTQRFQEALQDPFTLC
LANVPGQPDLRHIVIDGSNVAMVHGLQHYFSSRGIALAVQYFWDRGHRDITVFVPQWRFSKDSKVRESHF
LQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEESDKWMAIIRERLLPFT
FVGNLFMVPDDPLGRNGPTLDEFLKKPVRKQGSSKTQQPSKGSTEQANQQQGKDADRSNGGIRKTRETER
LRRQLLEVFWGQDHKVDFILQREPYCRDINQLSEALLSLNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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