CCDS Report for Consensus CDS

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Report for CCDS42518.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
42518.1	Public	Homo sapiens	19	CHERP	24	110	108

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42518.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000546361.7	ENSP00000439856.2	MANE Select	Accepted	alive
		NCBI	NM_006387.6	NP_006378.3	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_006378.3	916	Q8IWX8	916	100%	0	0

Chromosomal Locations for CCDS 42518.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)

Genome Browser links:

Chromosome	Start	Stop
19	16519159	16519352
19	16519621	16519715
19	16520149	16520265
19	16520364	16520507
19	16520826	16520912
19	16521521	16521654
19	16523052	16523290
19	16525242	16525677
19	16528080	16528255
19	16529648	16529900
19	16530585	16530674
19	16530769	16530880
19	16532598	16532749
19	16533011	16533148
19	16535452	16535636
19	16541870	16542043
19	16542354	16542378

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2751 nt):
ATGGAGATGCCGCTGCCCCCCGATGACCAGGAGCTTCGAAATGTCATCGACAAGCTCGCCCAGTTCGTGG CTCGCAATGGGCCCGAGTTTGAGAAGATGACTATGGAGAAGCAGAAGGACAACCCCAAATTCTCGTTTCT TTTCGGAGGCGAATTCTACAGTTACTACAAGTGCAAGCTGGCGCTGGAGCAGCAGCAGCTCATCTGCAAG CAGCAGACCCCGGAGCTGGAGCCAGCCGCCACCATGCCACCCCTGCCACAGCCCCCGCTGGCCCCCGCCG CGCCCATCCCGCCGGCCCAGGGCGCGCCATCCATGGACGAGCTCATCCAGCAGAGCCAGTGGAACCTCCA GCAGCAGGAGCAGCACTTGCTGGCGCTCAGACAGGAGCAAGTGACAGCGGCCGTGGCCCACGCGGTGGAG CAGCAGATGCAGAAGCTTCTGGAGGAGACCCAGCTAGACATGAACGAGTTTGACAACCTCCTGCAGCCCA TCATCGACACGTGCACCAAGGACGCCATCTCGGCCGGGAAGAACTGGATGTTCAGCAATGCCAAGTCCCC GCCGCACTGTGAGCTGATGGCCGGCCACCTCCGGAACCGCATCACGGCTGATGGGGCACACTTCGAGCTG CGGCTGCACCTCATCTACCTGATCAATGACGTGCTGCACCACTGCCAGCGCAAGCAGGCCCGGGAGCTGC TGGCCGCCCTGCAGAAGGTCGTGGTGCCCATCTACTGCACCAGCTTCTTGGCCGTGGAGGAAGACAAGCA GCAGAAGATCGCCCGGCTCCTGCAGCTCTGGGAGAAAAACGGCTACTTCGATGACTCCATCATTCAGCAG CTACAGAGCCCAGCCCTGGGGCTTGGTCAGTACCAGGCCACCCTCATCAACGAGTACTCCTCAGTGGTCC AGCCGGTGCAGCTGGCCTTCCAGCAGCAGATCCAGACCCTCAAGACGCAGCACGAGGAGTTTGTCACCAG CCTGGCCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCTCCAGATGCCGCAGATGGAGGCTGAA GTCAAGGCCACGCCTCCACCGCCTGCTCCACCCCCGGCCCCAGCACCTGCCCCTGCCATCCCGCCCACCA CCCAGCCTGATGACAGCAAGCCTCCCATCCAGATGCCTGGCTCTTCAGAGTACGAAGCTCCAGGAGGGGT CCAGGATCCTGCAGCTGCCGGCCCCCGGGGCCCCGGGCCACACGACCAGATCCCACCAAACAAGCCCCCT TGGTTTGACCAGCCTCACCCCGTGGCTCCTTGGGGCCAGCAGCAGCCGCCAGAGCAGCCACCCTACCCGC ACCACCAGGGCGGCCCACCCCACTGCCCCCCCTGGAACAACAGCCATGAGGGCATGTGGGGCGAGCAGCG CGGTGACCCCGGCTGGAACGGCCAGCGCGACGCGCCCTGGAACAACCAGCCCGACGCCGCCTGGAACAGC CAGTTCGAGGGCCCCTGGAACAGCCAGCACGAGCAGCCGCCCTGGGGCGGGGGCCAGCGCGAGCCACCCT TCCGCATGCAGCGGCCCCCACACTTCCGGGGGCCCTTCCCGCCCCACCAGCAGCACCCGCAGTTCAACCA GCCTCCGCACCCCCACAACTTCAACCGCTTCCCGCCCCGCTTCATGCAGGACGACTTCCCGCCACGGCAC CCCTTCGAGCGGCCGCCCTATCCCCACCGCTTCGACTACCCCCAGGGGGACTTCCCTGCCGAAATGGGGC CCCCTCACCACCACCCTGGCCACCGCATGCCTCATCCTGGCATCAACGAGCACCCGCCTTGGGCTGGACC CCAGCACCCTGACTTCGGCCCTCCCCCCCATGGCTTCAACGGGCAGCCCCCACACATGCGGCGACAGGGC CCACCCCACATCAACCACGATGACCCCAGCCTGGTCCCCAATGTGCCCTACTTCGATCTCCCTGCTGGGC TGATGGCCCCCCTCGTGAAGCTGGAAGATCACGAGTACAAGCCTTTGGACCCTAAAGACATCCGCCTCCC ACCCCCCATGCCGCCCAGCGAGAGGCTGCTGGCTGCAGTGGAGGCCTTCTACAGCCCCCCGTCCCACGAC AGGCCCAGGAACAGTGAAGGCTGGGAGCAGAACGGCCTCTATGAGTTCTTCCGAGCAAAAATGCGGGCCC GGCGGAGGAAAGGCCAGGAGAAGAGGAACAGCGGACCCTCGAGGTCTCGGAGCAGATCCAAGAGTCGAGG GCGTTCTTCCTCCCGCTCCAACTCAAGATCCTCCAAGTCTTCAGGCTCGTACTCAAGGTCAAGGTCGCGC TCCTGCTCCCGTTCCTACTCCCGCTCCAGATCTAGAAGTCGGAGCAGGTCGCGCTCCTCCAGAAGCCGCT CCCGGTCCCAGTCGCGGTCCCGGTCCAAGTCGTACTCCCCAGGAAGAAGACGCCGGTCACGGTCCAGGAG CCCCACCCCGCCTTCCTCTGCTGGTCTGGGTTCTAATTCGGCGCCTCCCATCCCTGACTCAAGGCTCGGA GAAGAGAACAAAGGCCATCAGATGCTGGTGAAGATGGGCTGGAGCGGCTCAGGCGGCCTCGGTGCGAAGG AGCAAGGGATCCAGGACCCCATCAAGGGCGGGGACGTCCGGGATAAGTGGGACCAGTATAAAGGCGTGGG CGTGGCTCTGGATGACCCCTATGAGAACTACCGCAGGAACAAGAGCTACTCCTTCATCGCCCGCATGAAG GCCAGGGACGAGTGTAAGTAG
Translation (916 aa):
MEMPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICK QQTPELEPAATMPPLPQPPLAPAAPIPPAQGAPSMDELIQQSQWNLQQQEQHLLALRQEQVTAAVAHAVE QQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFEL RLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQ LQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQTLKTQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAE VKATPPPPAPPPAPAPAPAIPPTTQPDDSKPPIQMPGSSEYEAPGGVQDPAAAGPRGPGPHDQIPPNKPP WFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDAAWNS QFEGPWNSQHEQPPWGGGQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRH PFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQG PPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHD RPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSR SCSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDSRLG EENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMK ARDECK

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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