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Report for CCDS23701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23701.1 Public Mus musculus 10 Fuca2 23 108 98 CCDS HistoryNCBI Gene:66848Re-query CCDS DB by CCDS ID:23701.1Re-query CCDS DB by GeneID:66848See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060212.12 ENSMUSP00000055519.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060212.12Link to Ensembl Protein Viewer:ENSMUSP00000055519.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060212Re-query CCDS DB by Protein ID:ENSMUSP00000055519
Original member Current member EBI ENSMUST00000121465.2 ENSMUSP00000113499.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121465.2Link to Ensembl Protein Viewer:ENSMUSP00000113499.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000121465Re-query CCDS DB by Protein ID:ENSMUSP00000113499
Original member NCBI NM_001330198.1 NP_001317127.1 Updated not alive Link to Nucleotide Sequence:NM_001330198.1Link to Protein Sequence:NP_001317127.1Re-query CCDS DB by Nucleotide ID:NM_001330198Re-query CCDS DB by Protein ID:NP_001317127
Current member NCBI NM_001330198.2 NP_001317127.1 Accepted alive Link to Nucleotide Sequence:NM_001330198.2Link to Protein Sequence:NP_001317127.1Re-query CCDS DB by Nucleotide ID:NM_001330198Re-query CCDS DB by Protein ID:NP_001317127Link to BLAST:NP_001317127.1
Original member NCBI NM_025799.5 NP_080075.2 Updated not alive Link to Nucleotide Sequence:NM_025799.5Link to Protein Sequence:NP_080075.2Re-query CCDS DB by Nucleotide ID:NM_025799Re-query CCDS DB by Protein ID:NP_080075
Current member NCBI NM_025799.6 NP_080075.2 Accepted alive Link to Nucleotide Sequence:NM_025799.6Link to Protein Sequence:NP_080075.2Re-query CCDS DB by Nucleotide ID:NM_025799Re-query CCDS DB by Protein ID:NP_080075Link to BLAST:NP_080075.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317127.1 461 Q99KR8 461 100% 0 0
NP_080075.2 461 Q99KR8 461 100% 0 0

Chromosomal Locations for CCDS 23701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13501168 13501373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13503071 13503258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13505739 13506078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13506706 13506916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13507235 13507425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13512618 13512726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13514707 13514847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGCGCCTGGGGTTCCTGATGCTTCTGCCGCTGCTGCTGCTGCCGCTCCTGAGGCCTTGGGGGGTCACGA
GAGCCCTTAGCTATGACCCCACTTGGGAATCTCTGGACAGACGCCCGCTGCCAGCCTGGTTCGACCAGGC
CAAGTTCGGCATCTTTATCCACTGGGGAGTGTTCTCCGTGCCCAGCTTTGGTAGTGAATGGTTCTGGTGG
TATTGGCAAAAGGAGAAGAAACCCCAGTTTGTGGACTTTATGAACAATAATTATGCTCCTGGTTTTAAGT
ATGAAGATTTTGTAGTGCTATTTACAGCCAAGTATTTTAATGCAAACCAGTGGGCAGATATTCTCCAGGC
CTCTGGTGCCAAATATGTGGTCTTCACTTCTAAACATCACGAAGGCTTTACAATGTGGGGCTCAGACCGT
TCTTGGAACTGGAATGCAGTCGATGAGGGGCCAAAGAGGGACATTGTCAAGGAGCTTGAGGTGGCTGTGA
GGAACAGGACTGGCTTGCACTTTGGTCTGTACTATTCTCTTTTTGAATGGTTCCATCCGCTCTTTCTGGA
GGATCAGTCCAGCTCATTCCAAAAGCAGCGATTTCCCGTTTCTAAGACATTGCCTGAGCTCTATGAGTTG
GTGAACAGATACCAGCCTGAAGTCCTGTGGTCAGACGGAGATGGGGGCGCGCCAGATCACTACTGGAACA
GCACTGGCTTCTTAGCCTGGCTGTATAATGAAAGCCCAGTTCGGAAAACAGTAGTCACCAATGATCGCTG
GGGAGTCGGGTCTATCTGCAAACATGGTGGCTACTATACTTGCAGTGACCGTTACAATCCTGGCTATCTC
TTGCCACACAAATGGGAAAACTGCATGACAATAGATAAGTTCTCCTGGGGCTACAGGCGGGAAGCTGAAA
TCAGTGATTATCTTACAATTGAAGAGTTGGTGAAGAAACTTGTGGAAACAGTCGCATGTGGTGGAAATCT
TTTGATGAATATTGGTCCCACGGGAGACGGCACCATTCCTGTCATTTTTGAGGAGCGATTAAGGCAAATG
GGAACCTGGCTGAAGGTCAACGGGGAAGCTATTTATGAAACACACACTTGGAGGTCTCAGAATGACACTG
TCACTCCGGATGTGTGGTACACATCTAAACCCGAGAAGAAATTAGTCTATGCTATTTTTCTTAAATGGCC
CATCTCTGGAAAGCTGTTTCTTGGACAACCCATAGGTAGTCTGGGGGAAACAGAGGTAGAACTGCTGGGC
CATTGGCAGCCACTGACTTGGACATCTTCACAGCCCAGTGGCATCACCGTGGAGTTACCTCTGCTCAGCG
TACATCAGATGCCCTGTAAATGGGGATGGACTCTTGTGCTAAGTAATGTGATTTAA

Translation (461 aa):
MRLGFLMLLPLLLLPLLRPWGVTRALSYDPTWESLDRRPLPAWFDQAKFGIFIHWGVFSVPSFGSEWFWW
YWQKEKKPQFVDFMNNNYAPGFKYEDFVVLFTAKYFNANQWADILQASGAKYVVFTSKHHEGFTMWGSDR
SWNWNAVDEGPKRDIVKELEVAVRNRTGLHFGLYYSLFEWFHPLFLEDQSSSFQKQRFPVSKTLPELYEL
VNRYQPEVLWSDGDGGAPDHYWNSTGFLAWLYNESPVRKTVVTNDRWGVGSICKHGGYYTCSDRYNPGYL
LPHKWENCMTIDKFSWGYRREAEISDYLTIEELVKKLVETVACGGNLLMNIGPTGDGTIPVIFEERLRQM
GTWLKVNGEAIYETHTWRSQNDTVTPDVWYTSKPEKKLVYAIFLKWPISGKLFLGQPIGSLGETEVELLG
HWQPLTWTSSQPSGITVELPLLSVHQMPCKWGWTLVLSNVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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