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Report for CCDS81743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81743.1 Public Homo sapiens 12 IQCD 24 110 108 CCDS HistoryNCBI Gene:115811Re-query CCDS DB by CCDS ID:81743.1Re-query CCDS DB by GeneID:115811See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81743.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416617.3 ENSP00000400669.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000416617.3Link to Ensembl Protein Viewer:ENSP00000400669.2Re-query CCDS DB by Nucleotide ID:ENST00000416617Re-query CCDS DB by Protein ID:ENSP00000400669
Original member Current member NCBI NM_001330452.2 NP_001317381.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330452.2Link to Protein Sequence:NP_001317381.1Re-query CCDS DB by Nucleotide ID:NM_001330452Re-query CCDS DB by Protein ID:NP_001317381Link to BLAST:NP_001317381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317381.1 449 Q96DY2-1 449 100% 0 0

Chromosomal Locations for CCDS 81743.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113195575 113195889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113197541 113197612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113200580 113200813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113207438 113208166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGCTTTAGACATTCTCGCCATGGCCCCTTTGTATCAGGCCCCTGCCATCAACAGAATAGGGCCAAAGA
CAGACCCATCTAAAAGGCCAGCTGATCCACTAAAACCCTTGGTTCTCTCTAGGACCAAACTCACCACCAT
TGAGGCCAAAAGGATCATGTCCATCCTGGATGAGGCGATCTACAAGGTGGAGCTGGTGACCTTGCTGTCG
TATGTGGCATCCAACAGAGAGGATATGGAGGGGATGCTGGGGGAGGACGTCATGAGGGCAGTGAGAGAGC
ATGAGGATCTCTGCCAGGTCCTCCTTGAAAACGTCAGGTGCCTGAAAGAGAAAGAAAGGCAATTGCAGGA
GCAGAAAGAGGCTGAGGAGGAAGGGTGGCTCAGAGACCGCCTCCTTTCCATAGAGCTGCAGAAATCCAGC
CTCTCACCACTTATGCAGCAGATCAAAGACTCCACCAAGAACGTCCTTAGACTCTTGCTCAGCAACCCCC
AGGCTGCTAGGCTCCTGCAGATGCAGACACAGGGTAGAAGTGCAGAAGCCCAGAATTTTATTGACAGCCT
GATAGAGCTCCGTGGTTTCCTGTTTGAAAAACTACTCACTAGTCCCATGGAAGCGAGGGATAAGGCCCAG
TTCTTACAGGATATCAGTAGACAGAATAGTAATAACCAACAAATCATTGATACTCTTGAAAAGGAATTGG
CGGAGAGAATGAAGAACAGGAATGCAGAGGTGGAAAAGGAGAACTTTGTGATCCAAGAACTGAAAAACCA
CCTGCACCAGGTGCTCAAGTTCTCAGAGAACAGCCTCGTTCGCACTAAGCAGGAGGCTGAGAAGCAGCAG
AAGGCCGATTTCCGGGCATCACAGGCCAGGGTGGCCAAGATCCAGCAGGAGATCCTGCAGCTGCAGTCAC
AGTTTTACAACCTGGTCATGGAGAACCGGGAGGCAGAGCAGGCGCTGAGGAAGAAGAAATATAAAGTGGA
AACGGAAATCGAGAACTGGATCCAGAAATATGATACAGAGATGGGTGAGAAGCAGGAGGAGTTGGAGGAT
CTGGACGCTGTTCACAGGGAGGAGAAGATCTCGCTGGAGGAGCTCAGGCGGAGGCACAAAGTGCTGGTGG
GAGAGTTTGCGCAGATCCGGGAAGAGCGGGAGATCAACTCCAAGAAAAGGATGGAGGCAGAGCAGGAGAT
GGTGCGCATGGTACGGGCGGCCACGCTCATCCAGGCCCTATGGAAGGGCTATCTGGTGCGCTCCCTGCTC
AGATCCAAGAAGAAGCGGGGCAAGGGCAAAGCAAAGGACAAGGAGAAGGGCAAGCAGAAAGGCAAGGAGA
AGGGCAAGGGCAAGAAATGA

Translation (449 aa):
MALDILAMAPLYQAPAINRIGPKTDPSKRPADPLKPLVLSRTKLTTIEAKRIMSILDEAIYKVELVTLLS
YVASNREDMEGMLGEDVMRAVREHEDLCQVLLENVRCLKEKERQLQEQKEAEEEGWLRDRLLSIELQKSS
LSPLMQQIKDSTKNVLRLLLSNPQAARLLQMQTQGRSAEAQNFIDSLIELRGFLFEKLLTSPMEARDKAQ
FLQDISRQNSNNQQIIDTLEKELAERMKNRNAEVEKENFVIQELKNHLHQVLKFSENSLVRTKQEAEKQQ
KADFRASQARVAKIQQEILQLQSQFYNLVMENREAEQALRKKKYKVETEIENWIQKYDTEMGEKQEELED
LDAVHREEKISLEELRRRHKVLVGEFAQIREEREINSKKRMEAEQEMVRMVRAATLIQALWKGYLVRSLL
RSKKKRGKGKAKDKEKGKQKGKEKGKGKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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