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Report for CCDS37301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37301.1 Public Mus musculus 16 Rfc4 23 108 98 CCDS HistoryNCBI Gene:106344Re-query CCDS DB by CCDS ID:37301.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023598.14 ENSMUSP00000023598.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023598.14Link to Ensembl Protein Viewer:ENSMUSP00000023598.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023598Re-query CCDS DB by Protein ID:ENSMUSP00000023598
Original member Current member NCBI NM_145480.1 NP_663455.1 Accepted alive Link to Nucleotide Sequence:NM_145480.1Link to Protein Sequence:NP_663455.1Re-query CCDS DB by Nucleotide ID:NM_145480Re-query CCDS DB by Protein ID:NP_663455Link to BLAST:NP_663455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663455.1 364 Q99J62 364 100% 0 0

Chromosomal Locations for CCDS 37301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 23114012 23114107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23114187 23114303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23114445 23114525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23114607 23114732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23115375 23115495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23115715 23115858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23117944 23118063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23120909 23120988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23124536 23124614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23127400 23127530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGCAGGCATTTCTGAAAGGCACATCTGTCAGTGCCAAAGCACAACTGACCAAGGACCGGGGGACACCTG
CCACTGCAGGAAGCAGTGGAGAAACCAAGAAAGTCAAACCAGTTCCTTGGGTGGAAAAATACCGTCCAAA
GTGTGTGGATGAAGTGGCTTTCCAGGACGAAGTGGTTGCAGTGCTGAGAAAGTCCTTAGAAGGAGCTGAC
CTTCCTAATCTCTTGTTCTATGGGCCACCTGGAACTGGCAAAACATCCACCATTTTGGCAGCAGCTAGAG
AGCTCTTTGGGCCTGAACTCTTTCGATTAAGAGTCCTTGAGTTAAATGCATCTGATGAACGTGGAATACA
AGTAGTCCGAGAGAAAGTGAAAAATTTTGCTCAGTTAACTGTATCAGGAAGTCGTTCAGATGGGAAGCCA
TGTCCTCCCTTTAAGATTGTAATTCTGGATGAAGCAGATTCGATGACTTCAGCTGCTCAGGCAGCTTTAA
GGCGTACCATGGAAAAAGAATCAAAAACAACCAGATTCTGCCTCATCTGTAACTATGTCAGTCGAATAAT
TGAACCCCTCACTTCTAGATGTTCAAAATTCCGCTTCAAGCCTCTGTCAGATAAGATTCAACAGGAGCGA
TTACTGGATATTGCTGAGAAGGAAAATGTCAAAATTGGCAATGAGGAAATAGCGTATCTTGTTAAGATAT
CAGAAGGAGATTTACGGAAAGCCATCACATTTCTTCAGAGTGCCACTCGACTAACAGGTGGAAAGGAAGT
CTCTGAAGATGTGATCACAGACATTGCTGGGGTAATACCAGCTGCAACCATTGATGGAATATTCACTGCA
TGTCACAGTGGCTCTTTTGACAAACTAGAAGCTGTGGTAAAGAACCTCATAGATGAAGGACATGCAGCTA
CTCAGCTTGTCAATCAACTTCATGATGCAATTATAGAAAATGAAAATCTGTCTGATAAACACAAGTCCAT
TATCACAGAGAAACTTGCTGAAGTAGACAAGTGCTTGGCAGATGGTGCAGATGAACACCTGCAGTTGATG
AGCCTTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAG

Translation (364 aa):
MQAFLKGTSVSAKAQLTKDRGTPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGAD
LPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKP
CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQER
LLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTA
CHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLM
SLCATVMQQLTQNC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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