NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11188.1 Public Homo sapiens 17 RAI1 24 110 108 CCDS HistoryNCBI Gene:10743Re-query CCDS DB by CCDS ID:11188.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11188.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353383.6 ENSP00000323074.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000353383.6Link to Ensembl Protein Viewer:ENSP00000323074.4Re-query CCDS DB by Nucleotide ID:ENST00000353383Re-query CCDS DB by Protein ID:ENSP00000323074
Original member Current member NCBI NM_030665.4 NP_109590.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030665.4Link to Protein Sequence:NP_109590.3Re-query CCDS DB by Nucleotide ID:NM_030665Re-query CCDS DB by Protein ID:NP_109590Link to BLAST:NP_109590.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109590.3 1906 Q7Z5J4-1 1906 100% 0 0

Chromosomal Locations for CCDS 11188.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17792949 17798513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17803756 17803849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17809390 17809439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17809970 17809981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5721 nt):
ATGCAGTCTTTTCGAGAAAGGTGTGGTTTCCATGGCAAACAACAGAACTACCAGCAGACCTCGCAGGAAA
CATCACGCCTAGAGAATTACAGGCAGCCGAGTCAGGCCGGGCTAAGCTGCGACCGGCAGCGGCTGCTCGC
CAAGGACTATTATAACCCGCAGCCTTACCCGAGCTATGAGGGTGGCGCTGGCACGCCCTCTGGCACTGCA
GCCGCGGTGGCCGCCGACAAGTACCACCGAGGCAGCAAGGCCCTGCCCACACAGCAAGGCCTGCAGGGGA
GGCCGGCTTTCCCTGGCTACGGCGTCCAGGACAGCAGCCCCTACCCAGGCCGCTATGCTGGTGAGGAGAG
CCTTCAGGCTTGGGGGGCCCCACAGCCACCACCCCCACAGCCGCAGCCACTACCTGCAGGGGTGGCCAAG
TATGATGAGAACTTGATGAAAAAGACAGCAGTGCCCCCCAGCAGGCAGTATGCAGAGCAGGGCGCCCAGG
TGCCCTTTCGGACTCACTCCCTGCACGTCCAGCAGCCACCGCCGCCCCAGCAGCCCCTGGCATACCCCAA
GCTCCAAAGGCAGAAGCTGCAGAACGACATTGCCTCCCCTCTGCCCTTCCCCCAGGGTACCCACTTTCCT
CAGCATTCCCAGTCCTTCCCCACCTCCTCCACCTACTCCTCCTCTGTCCAGGGTGGTGGGCAGGGGGCCC
ACTCCTATAAGAGTTGCACAGCACCGACTGCCCAGCCCCATGACAGGCCGCTGACTGCCAGCTCCAGCCT
GGCCCCGGGGCAGCGGGTCCAGAATCTTCATGCCTACCAGTCGGGCCGCCTCAGCTATGACCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCCCTTCAGAGCCGGCACCATGCCCAGGAAACCCTCC
ATTACCAAAACCTCGCCAAGTATCAGCACTACGGGCAGCAAGGCCAGGGCTACTGCCAGCCGGACGCAGC
CGTCCGGACCCCAGAGCAGTACTACCAGACCTTCAGCCCCAGCTCCAGCCACTCACCCGCCCGCTCCGTG
GGCCGCTCACCTTCCTACAGTTCCACACCGTCGCCGCTGATGCCAAACCTGGAGAACTTTCCCTACAGCC
AGCAGCCGCTCAGCACCGGGGCCTTCCCCGCAGGGATCACTGACCACAGCCACTTCATGCCCCTGCTCAA
TCCCTCCCCAACGGATGCCACCAGCTCTGTGGACACCCAGGCTGGCAACTGCAAGCCCCTTCAGAAGGAC
AAGCTCCCTGAGAACCTGCTGTCGGATCTCAGCCTGCAGAGCCTCACGGCGCTGACCTCACAGGTGGAGA
ACATCTCCAACACCGTCCAGCAGCTGCTGCTCTCCAAGGCTGCTGTGCCGCAGAAGAAAGGTGTCAAGAA
CCTCGTGTCCAGGACCCCAGAGCAGCATAAAAGCCAGCACTGCAGCCCCGAAGGGAGCGGCTACTCAGCC
GAGCCCGCAGGCACACCGCTGTCAGAGCCGCCGAGCAGCACGCCACAGTCCACGCATGCGGAGCCGCAGG
AGGCCGACTACCTGAGCGGCTCCGAGGACCCACTGGAGCGCAGCTTCCTCTACTGCAACCAGGCCCGTGG
CAGCCCTGCCAGGGTCAACAGCAACTCGAAGGCCAAGCCCGAGTCCGTGTCCACCTGTTCTGTGACCTCT
CCTGACGACATGTCCACCAAATCTGACGACTCCTTCCAGAGCCTACACGGCAGTCTGCCGCTCGACAGCT
TCTCCAAGTTCGTGGCGGGTGAGCGGGACTGTCCGCGGCTGCTGCTCAGCGCCCTGGCACAGGAGGACCT
GGCCTCCGAGATCCTGGGGCTGCAGGAAGCCATCGGTGAGAAGGCCGACAAAGCTTGGGCTGAAGCACCC
AGCCTGGTCAAGGACAGCAGCAAGCCACCCTTCTCGCTGGAGAACCACAGCGCCTGCCTGGACTCTGTGG
CCAAGAGTGCGTGGCCCCGGCCTGGGGAGCCGGAGGCCCTGCCCGACTCCTTGCAGCTGGACAAGGGCGG
CAATGCCAAGGACTTCAGCCCAGGGCTGTTTGAAGACCCTTCCGTGGCCTTCGCTACGCCTGACCCCAAA
AAGACAACTGGTCCTCTCTCCTTTGGTACCAAGCCCACCCTTGGGGTTCCTGCTCCAGACCCCACTACAG
CAGCTTTTGACTGTTTCCCGGACACAACCGCTGCCAGCTCAGCGGACAGCGCCAACCCCTTTGCCTGGCC
AGAGGAAAACCTGGGGGATGCTTGTCCCAGGTGGGGATTGCACCCTGGCGAGCTTACCAAGGGCCTGGAG
CAGGGTGGGAAGGCCTCAGATGGCATCAGCAAAGGGGACACCCATGAGGCTTCGGCCTGCCTGGGCTTCC
AGGAGGAGGACCCCCCTGGGGAGAAGGTGGCCTCGTTGCCCGGGGACTTCAAGCAGGAGGAGGTGGGTGG
GGTGAAGGAGGAGGCAGGTGGGCTGCTGCAGTGCCCCGAGGTGGCCAAGGCTGACCGGTGGCTGGAGGAC
AGCCGGCACTGCTGTTCCACCGCCGACTTCGGGGACCTCCCACTGCTGCCACCCACCAGCAGGAAGGAGG
ACCTGGAAGCTGAGGAGGAGTACTCCTCCCTATGTGAGCTCCTGGGCAGCCCCGAGCAGAGGCCTGGCAT
GCAGGACCCGCTGTCACCCAAGGCCCCACTCATCTGCACCAAGGAGGAGGTGGAGGAGGTGCTGGACTCC
AAGGCCGGCTGGGGCTCTCCGTGCCACCTCTCAGGGGAGTCCGTCATCCTGCTGGGCCCTACAGTGGGCA
CCGAGTCAAAGGTCCAGAGCTGGTTTGAGTCCTCTCTGTCACACATGAAGCCAGGTGAAGAGGGGCCTGA
TGGGGAGCGAGCTCCAGGGGATTCCACCACCTCGGACGCCTCTCTGGCCCAGAAGCCCAACAAGCCTGCT
GTGCCCGAGGCGCCCATCGCAAAGAAAGAGCCTGTGCCACGGGGCAAAAGCTTACGGAGCCGTCGGGTGC
ACCGGGGGCTGCCCGAGGCCGAGGACTCCCCATGCAGGGCACCAGTGCTGCCCAAAGACCTCTTGCTCCC
TGAATCCTGCACAGGGCCCCCCCAGGGACAGATGGAAGGGGCTGGAGCCCCAGGCCGGGGGGCCTCGGAA
GGGCTCCCCAGGATGTGTACTCGTTCTCTCACGGCCCTGAGTGAGCCCCGCACGCCCGGACCCCCAGGCC
TGACCACCACCCCTGCACCCCCAGACAAACTGGGGGGCAAGCAGCGAGCCGCCTTCAAGTCGGGCAAGCG
GGTGGGGAAGCCCTCACCCAAGGCTGCCTCCAGCCCCAGCAACCCGGCCGCCCTGCCTGTGGCCTCCGAC
AGCAGCCCGATGGGCTCCAAGACCAAGGAGACAGACTCACCCAGCACGCCTGGCAAGGACCAGCGCTCCA
TGATCCTTCGGTCACGCACCAAAACCCAGGAGATCTTCCACTCCAAGCGGCGGAGGCCCTCTGAGGGCCG
GCTCCCCAACTGCCGTGCCACCAAGAAGCTCCTCGACAACAGCCACTTGCCCGCCACATTCAAGGTCTCC
AGCAGCCCCCAGAAGGAGGGCAGGGTGAGCCAGCGGGCAAGGGTCCCCAAACCTGGTGCAGGCAGCAAGC
TCTCTGACCGGCCCCTCCATGCGCTCAAAAGGAAGTCGGCCTTCATGGCGCCGGTCCCCACCAAGAAGCG
GAACCTGGTCTTGCGGAGCCGCAGCAGCAGCAGCAGCAACGCCAGTGGCAATGGGGGAGATGGGAAGGAG
GAGAGGCCTGAGGGTTCCCCCACCCTCTTCAAGAGGATGTCTTCTCCCAAGAAAGCCAAGCCCACCAAGG
GCAATGGCGAGCCTGCCACAAAGCTCCCACCCCCGGAGACCCCCGATGCCTGCCTCAAGCTCGCCTCTCG
GGCAGCCTTCCAGGGGGCCATGAAGACCAAGGTGCTGCCACCCCGGAAGGGCCGGGGCCTGAAGCTGGAA
GCCATCGTGCAGAAGATCACCTCGCCCAGCCTCAAGAAGTTCGCATGTAAAGCGCCAGGGGCCTCTCCTG
GTAATCCTCTGAGCCCATCCCTTTCCGACAAAGACCGTGGGCTCAAGGGTGCTGGGGGCAGCCCAGTGGG
GGTGGAAGAAGGCCTGGTAAATGTGGGCACCGGGCAGAAGCTCCCAACTTCTGGGGCTGATCCGTTATGC
AGAAATCCAACCAACAGATCCTTAAAAGGCAAACTCATGAACAGTAAGAAACTGTCTTCTACTGACTGTT
TCAAAACCGAGGCCTTCACATCCCCGGAGGCCCTGCAGCCTGGGGGGACTGCCCTGGCGCCTAAGAAGAG
GAGCCGGAAAGGCCGGGCAGGGGCCCATGGACTCTCCAAAGGCCCGCTGGAGAAGCGGCCCTATCTTGGC
CCGGCTCTGCTCCTGACTCCCCGAGACAGGGCCAGTGGCACACAAGGGGCCAGTGAGGACAACTCTGGTG
GAGGAGGCAAGAAGCCAAAGATGGAGGAGCTGGGCCTGGCCTCCCAGCCCCCGGAGGGCAGGCCCTGCCA
GCCCCAGACAAGGGCACAGAAACAGCCAGGCCACACCAACTACAGCAGCTATTCCAAGCGGAAGCGCCTC
ACTCGGGGCCGGGCCAAGAACACCACCTCTTCACCCTGTAAGGGGCGTGCCAAGCGACGACGACAGCAGC
AGGTGCTGCCCCTGGATCCCGCAGAGCCTGAAATCCGCCTCAAGTACATTTCCTCTTGCAAGCGGCTGAG
GTCAGACAGCCGGACCCCCGCCTTCTCACCCTTCGTGCGGGTGGAGAAGCGAGACGCGTTCACCACCATA
TGCACTGTTGTCAACTCCCCTGGAGATGCGCCCAAGCCCCACAGGAAGCCTTCCTCCTCTGCCTCCTCTT
CCTCATCCTCGTCCTCGTTCTCCTTGGATGCAGCCGGGGCCTCCCTGGCCACACTCCCTGGAGGCTCCAT
CCTGCAGCCGCGGCCCTCCTTGCCCCTCTCCTCCACGATGCACTTGGGGCCTGTGGTTTCCAAGGCCCTG
AGTACCTCTTGCCTTGTTTGCTGCCTCTGCCAAAACCCGGCCAACTTCAAGGACCTTGGGGACCTCTGTG
GGCCCTACTACCCTGAACACTGCCTCCCCAAAAAGAAGCCAAAACTCAAGGAGAAGGTGCGGCCAGAAGG
CACCTGTGAGGAGGCCTCGCTGCCGCTTGAGAGAACACTCAAAGGTCCCGAGTGTGCAGCTGCCGCCACT
GCCGGGAAGCCCCCCAGGCCTGACGGCCCAGCTGACCCGGCCAAGCAGGGCCCACTGCGCACCAGTGCCC
GGGGCCTGTCCCGGAGGCTGCAGAGCTGCTACTGCTGTGATGGCCGGGAGGATGGGGGCGAGGAGGCAGC
CCCAGCCGACAAGGGTCGCAAACATGAGTGCAGCAAGGAGGCTCCGGCAGAGCCCGGCGGGGAGGCCCAG
GAGCACTGGGTGCATGAGGCCTGTGCCGTGTGGACCGGCGGCGTCTACCTGGTGGCCGGGAAGCTCTTTG
GGCTGCAGGAGGCCATGAAGGTGGCCGTGGACATGATGTGTTCCAGCTGCCAAGAAGCCGGGGCCACCAT
TGGGTGCTGCCACAAAGGATGCCTCCACACCTACCACTACCCGTGTGCCAGCGATGCAGGTTGCATATTC
ATCGAAGAGAACTTTTCTTTGAAATGTCCCAAACATAAGAGGCTGCCGTAG

Translation (1906 aa):
MQSFRERCGFHGKQQNYQQTSQETSRLENYRQPSQAGLSCDRQRLLAKDYYNPQPYPSYEGGAGTPSGTA
AAVAADKYHRGSKALPTQQGLQGRPAFPGYGVQDSSPYPGRYAGEESLQAWGAPQPPPPQPQPLPAGVAK
YDENLMKKTAVPPSRQYAEQGAQVPFRTHSLHVQQPPPPQQPLAYPKLQRQKLQNDIASPLPFPQGTHFP
QHSQSFPTSSTYSSSVQGGGQGAHSYKSCTAPTAQPHDRPLTASSSLAPGQRVQNLHAYQSGRLSYDQQQ
QQQQQQQQQQQALQSRHHAQETLHYQNLAKYQHYGQQGQGYCQPDAAVRTPEQYYQTFSPSSSHSPARSV
GRSPSYSSTPSPLMPNLENFPYSQQPLSTGAFPAGITDHSHFMPLLNPSPTDATSSVDTQAGNCKPLQKD
KLPENLLSDLSLQSLTALTSQVENISNTVQQLLLSKAAVPQKKGVKNLVSRTPEQHKSQHCSPEGSGYSA
EPAGTPLSEPPSSTPQSTHAEPQEADYLSGSEDPLERSFLYCNQARGSPARVNSNSKAKPESVSTCSVTS
PDDMSTKSDDSFQSLHGSLPLDSFSKFVAGERDCPRLLLSALAQEDLASEILGLQEAIGEKADKAWAEAP
SLVKDSSKPPFSLENHSACLDSVAKSAWPRPGEPEALPDSLQLDKGGNAKDFSPGLFEDPSVAFATPDPK
KTTGPLSFGTKPTLGVPAPDPTTAAFDCFPDTTAASSADSANPFAWPEENLGDACPRWGLHPGELTKGLE
QGGKASDGISKGDTHEASACLGFQEEDPPGEKVASLPGDFKQEEVGGVKEEAGGLLQCPEVAKADRWLED
SRHCCSTADFGDLPLLPPTSRKEDLEAEEEYSSLCELLGSPEQRPGMQDPLSPKAPLICTKEEVEEVLDS
KAGWGSPCHLSGESVILLGPTVGTESKVQSWFESSLSHMKPGEEGPDGERAPGDSTTSDASLAQKPNKPA
VPEAPIAKKEPVPRGKSLRSRRVHRGLPEAEDSPCRAPVLPKDLLLPESCTGPPQGQMEGAGAPGRGASE
GLPRMCTRSLTALSEPRTPGPPGLTTTPAPPDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAALPVASD
SSPMGSKTKETDSPSTPGKDQRSMILRSRTKTQEIFHSKRRRPSEGRLPNCRATKKLLDNSHLPATFKVS
SSPQKEGRVSQRARVPKPGAGSKLSDRPLHALKRKSAFMAPVPTKKRNLVLRSRSSSSSNASGNGGDGKE
ERPEGSPTLFKRMSSPKKAKPTKGNGEPATKLPPPETPDACLKLASRAAFQGAMKTKVLPPRKGRGLKLE
AIVQKITSPSLKKFACKAPGASPGNPLSPSLSDKDRGLKGAGGSPVGVEEGLVNVGTGQKLPTSGADPLC
RNPTNRSLKGKLMNSKKLSSTDCFKTEAFTSPEALQPGGTALAPKKRSRKGRAGAHGLSKGPLEKRPYLG
PALLLTPRDRASGTQGASEDNSGGGGKKPKMEELGLASQPPEGRPCQPQTRAQKQPGHTNYSSYSKRKRL
TRGRAKNTTSSPCKGRAKRRRQQQVLPLDPAEPEIRLKYISSCKRLRSDSRTPAFSPFVRVEKRDAFTTI
CTVVNSPGDAPKPHRKPSSSASSSSSSSSFSLDAAGASLATLPGGSILQPRPSLPLSSTMHLGPVVSKAL
STSCLVCCLCQNPANFKDLGDLCGPYYPEHCLPKKKPKLKEKVRPEGTCEEASLPLERTLKGPECAAAAT
AGKPPRPDGPADPAKQGPLRTSARGLSRRLQSCYCCDGREDGGEEAAPADKGRKHECSKEAPAEPGGEAQ
EHWVHEACAVWTGGVYLVAGKLFGLQEAMKVAVDMMCSSCQEAGATIGCCHKGCLHTYHYPCASDAGCIF
IEENFSLKCPKHKRLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH