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Report for CCDS41094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41094.1 Public Mus musculus X Magee1 23 108 98 CCDS HistoryNCBI Gene:107528Re-query CCDS DB by CCDS ID:41094.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033578.6 ENSMUSP00000094078.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033578.6Link to Ensembl Protein Viewer:ENSMUSP00000094078.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000033578Re-query CCDS DB by Protein ID:ENSMUSP00000094078
Original member Current member NCBI NM_053201.4 NP_444431.3 Accepted alive Link to Nucleotide Sequence:NM_053201.4Link to Protein Sequence:NP_444431.3Re-query CCDS DB by Nucleotide ID:NM_053201Re-query CCDS DB by Protein ID:NP_444431Link to BLAST:NP_444431.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444431.3 918 Q6PCZ4 918 100% 0 0

Chromosomal Locations for CCDS 41094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 105120611 105123367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2757 nt):
ATGTCGCTGGTAAGCCAGAATTCGCGCCGCCGCCGCGGTGGAAGGGCCAATGCGCGCAGAAACAACGGGA
AGGGTCACCCTGCTGCTGTGCCAGGCCCAGACGTCCCTCGGGATCGCAACGATCCTAAGATCCTCCAGGG
CCTCCGCGCCTCTGAGGGCCCTGGCACCTCCATGCTGCCCACCCCCCGGGAGGGCCCAAGCGCCTCTGTG
CCGCCCACCGCCTCAGAGGGCTCAAGCGCCCCTAGGCAGTTCATCATTTCCCAGGGGCCGAACACCTCCG
AGATGCCCACCTCCAGGAAGGGTCGGGGCGCCTCCCGGCCTCCTGCAGTTTCCGCAGGGCTGAACACCGC
TATGTCAATCACCGCCTCGGAGGGCCCGAATAGCCCTGTGCCGCCCACTGCTCCTAAAGGCTCAAAGGCC
TATGAGCATCTCCCTGTCTCAGAAGGGCTGGCCATCTCTGAGCAGCGTCACTCTGATGGGGGCCCTAACA
TGGAGCCCACCCTGGGTGAGGGCCCGGGAATCTCGGTGCCGCCCACCTTCTCTGAGGAATCGGGCATTTC
TGATGAGGGCTTGAGCATCTTTATGTCGCCCAACATCTCGGAGGGACCGGGTATCAACGAGCCCTACTCC
GTTAGTGAGGACCCAAGCACTTCGGTGCCGCCCACTGACTCTAATGGACTGGGCATCAACCTGCCGCCCA
CCTTCGGTGAGGGCCTGAGCATCTCTATGCTGTTCTCCGCTTTGGAGGAACCCGACATCTTTGCGCCGCC
CCCCTCCGCTGAGGGACTGTTCGCCTCCATGTCGCCCCCCTCCGGTGAGATCCAGAGCTCCTGGGTGTCG
CCCATCATAATGGAGGGATGTAACGTCAACGTGCCGCCCACCTCCAAAAAGGGACTGCGCACCTCGGTGC
CATCAGCTGCTTGTGAGAGCCCGAGCACCTCAGCCGAGGGCCTGAGCTCGTCCCTGTCATCCATTTCTGC
TGAGGGCTTCTGCAGCTCGCTGGCGCCATGCGCTGCGGAGGGATCCTGTGAGCTGCTTCCCTGCGGGGAG
GGCCGGAGCACCTCGGAGCTGCACTGCCTGGGGGAGGGGTCGAGCACCTCGCAGATGTCCCTAGCTGCCG
AGGGCCCTAGCGCTTCTGGGATGCCCACTGAAGCTAATAACCCCGAGGAAGCACTGAGCTGCTGTGCTTC
TGAGCGCAGGAACAAGAGCACCTCCCGTGCTCTGCAAAAGGCCAAGGATCCATCTGTACGCCCAAAGCGT
GAAGACCGCTTCCTGGATTTCCAGGTCCTGAGAGACAGTAAGAATTCCAACTCCATCACCATTATGGGCC
TGGGCACCTCCCGCGTTGCTCTTACCTTGAAGCCTCAGGATCCCATGGAGCAAAACGTAGCAGAATTGTT
GCAGTTTCTGCTGCTGAAGGATCAGACCAAGTACCCTATCAAGGAATCTGATATGAGGGAATTCATTGAC
AAAGACTATCGCCACCAGTTCCCGGAGATCCTCAGACGAGCAGCAGTCCACCTGGAGTGCATTTTTCGGT
TTGAACTGAAGGAGCTCGACACTGAGGAGCACATCTACATCCTGCTCAACAAACTGGGACCAGTGCCCTT
TGAAGGGTTAGAAGACGTCCCAAATGGGCCAAAGATGGGCCTCTTGATGATGATTCTGGGACACATATTA
CTAAATGGCAACCAAGCGAGAGAAGCTGATATCTGGGAGATGCTCTGGAGATTCGGAGTGCAGCGTGAAA
GAAGGCTTTCTGTTTTTGGGAACGTGAAGAGACTTCTGTCTGTAGAGTTTGTGTGGCAGCGTTACTTGGA
CTATAGGCCACTAACTGACTGTGTGCCAGTCGAGTATGAGTTTTACTGGGGCCCACGATCCCGCGCAGAA
ACCACCAAGATGAAAATTCTGAAGTTCATGGCTAAGATCTATAACAAAGATCCTATGGACTGGCCAGCCC
TGTACAACGAAGCTCTGGAAGAAGACGCTGACAGAGTTGTTGTTAATAACTTCAGAGTTGCTCGTCCATT
TAGGAGGCCCCTTTTTGCAGAAGTTGCTCCAGAGCTAGATGCTTCTGGCTCAAAATATTCTCCCCATTCT
TGGCCTGAGTCAAGATTAGAGAGCAAGGCAAGGAAATTGGTCCAGTTATTTCTGCTGATGGATTCAACTA
AGCTGCCTATACCAAAGAAGGGAATCCTGTATTACATCGGTCGAGAGTGCACCAAAGTGTTCCCTGATCT
CCTGAATCGTGCTGCTCGCACCCTAAACCACGTGTATGGCACAGAGCTAGTGGTCCTTGATCCCAGGAAC
CACTCCTACACCCTGTACAACCGAAGAGAAATGGAAGATACAGAAGAGATCATGGACAGTCCAAACAGGC
CCGGCAACAATTTCTTAATGCAGGTTCTGAGCTTCATCTTTATCATGGGCAACCATGCGAGGGAGTCTGC
AGTCTGGGCCTTTCTAAGGGGCTTGGGAGTTCAAAATGGCAGAAAGCACGTGATTACCTGTCGGTATTTG
AGTCAGCGCTACCTAGACAGTTTGCGGGTTCCTGACAGTGATCCGGTGCAATATGATTTTGTATGGGGCC
CTAGAGCCCGCCTGGAAACCTCCAAGATGAAAGCCCTGCGATATGTGGCCCGAATCCACAGAAAGGAGCC
AGAAGACTGGCCGGAGCAGTACAGGGAGGCAATGGAAGATGAGGCCAACAGAGCTGAAGCTGGGCGTCGT
CCGTTGATCGTTCGCAACTTGCGATAG

Translation (918 aa):
MSLVSQNSRRRRGGRANARRNNGKGHPAAVPGPDVPRDRNDPKILQGLRASEGPGTSMLPTPREGPSASV
PPTASEGSSAPRQFIISQGPNTSEMPTSRKGRGASRPPAVSAGLNTAMSITASEGPNSPVPPTAPKGSKA
YEHLPVSEGLAISEQRHSDGGPNMEPTLGEGPGISVPPTFSEESGISDEGLSIFMSPNISEGPGINEPYS
VSEDPSTSVPPTDSNGLGINLPPTFGEGLSISMLFSALEEPDIFAPPPSAEGLFASMSPPSGEIQSSWVS
PIIMEGCNVNVPPTSKKGLRTSVPSAACESPSTSAEGLSSSLSSISAEGFCSSLAPCAAEGSCELLPCGE
GRSTSELHCLGEGSSTSQMSLAAEGPSASGMPTEANNPEEALSCCASERRNKSTSRALQKAKDPSVRPKR
EDRFLDFQVLRDSKNSNSITIMGLGTSRVALTLKPQDPMEQNVAELLQFLLLKDQTKYPIKESDMREFID
KDYRHQFPEILRRAAVHLECIFRFELKELDTEEHIYILLNKLGPVPFEGLEDVPNGPKMGLLMMILGHIL
LNGNQAREADIWEMLWRFGVQRERRLSVFGNVKRLLSVEFVWQRYLDYRPLTDCVPVEYEFYWGPRSRAE
TTKMKILKFMAKIYNKDPMDWPALYNEALEEDADRVVVNNFRVARPFRRPLFAEVAPELDASGSKYSPHS
WPESRLESKARKLVQLFLLMDSTKLPIPKKGILYYIGRECTKVFPDLLNRAARTLNHVYGTELVVLDPRN
HSYTLYNRREMEDTEEIMDSPNRPGNNFLMQVLSFIFIMGNHARESAVWAFLRGLGVQNGRKHVITCRYL
SQRYLDSLRVPDSDPVQYDFVWGPRARLETSKMKALRYVARIHRKEPEDWPEQYREAMEDEANRAEAGRR
PLIVRNLR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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