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Report for CCDS7921.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
7921.1 |
Public |
Homo sapiens |
11 |
ATG13 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:9776](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:7921.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:9776](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 7921.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000524625.5 |
ENSP00000433543.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000524625.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000433543.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000524625](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000433543](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000529655.5 |
ENSP00000433756.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000529655.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000433756.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000529655](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000433756](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001205121.2 |
NP_001192050.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001205121.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001192050.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001205121](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001192050](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001192050.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346342.2 |
NP_001333271.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346342.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333271.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346342](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333271](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333271.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346344.2 |
NP_001333273.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346344.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333273.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346344](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333273](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333273.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346346.2 |
NP_001333275.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346346.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333275.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346346](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333275](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333275.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346348.2 |
NP_001333277.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346348.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333277.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346348](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333277](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333277.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346349.2 |
NP_001333278.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346349.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333278.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346349](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333278](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333278.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346350.2 |
NP_001333279.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346350.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333279.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346350](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333279](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333279.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346351.2 |
NP_001333280.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346351.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333280.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346351](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333280](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333280.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346352.2 |
NP_001333281.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346352.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333281.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346352](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333281](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333281.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346353.2 |
NP_001333282.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346353.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333282.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346353](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333282](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333282.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001346354.2 |
NP_001333283.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001346354.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001333283.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001346354](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001333283](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001333283.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_014741.5 |
NP_055556.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_014741.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_055556.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_014741](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_055556](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_055556.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 7921.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1443 nt): ATGGAAACTGATCTCAATTCCCAGGACAGAAAGGACCTGGACAAGTTTATTAAATTTTTTGCCCTCAAGA CTGTCCAAGTGATTGTCCAGGCTCGGCTTGGTGAAAAGATTTGCACTCGTTCATCATCTTCTCCAACGGG TTCAGATTGGTTCAACTTAGCAATCAAAGACATCCCAGAGGTTACACATGAAGCAAAGAAGGCACTGGCA GGACAGCTGCCTGCAGTCGGGAGGTCCATGTGTGTGGAGATTTCACTTAAGACTTCTGAGGGAGATTCCA TGGAGCTGGAAATATGGTGTCTTGAAATGAATGAAAAGTGTGATAAAGAAATCAAAGTTTCCTACACGGT GTACAACAGACTGTCATTGCTGCTGAAGTCCCTTCTTGCTATAACTAGGGTGACACCAGCCTATAGGCTC TCCAGGAAACAAGGGCATGAATATGTCATATTATACAGGATATATTTTGGAGAAGTTCAGCTGAGTGGCT TAGGAGAAGGCTTCCAGACAGTTCGTGTTGGGACAGTGGGCACCCCTGTGGGCACCATCACTCTTTCTTG TGCTTACAGAATTAACTTGGCATTCATGTCTACCAGGCAATTTGAGAGGACCCCACCTATCATGGGGATT ATTATTGATCACTTTGTGGACCGTCCCTATCCCAGCTCCTCTCCCATGCACCCCTGCAATTACAGAACTG CTGGTGAGGACACTGGAGTAATATACCCGTCTGTAGAAGACTCTCAAGAAGTGTGTACCACCTCTTTTTC CACCTCCCCACCATCCCAGCTGATGGTTCCTGGGAAGGAAGGTGGGGTACCCCTTGCTCCCAACCAGCCT GTCCATGGTACCCAGGCTGACCAGGAGAGACTGGCAACCTGCACCCCTTCTGACAGAACCCACTGTGCTG CCACACCCTCCAGTAGTGAGGATACTGAAACCGTATCAAACAGCAGTGAGGGACGGGCCTCCCCTCACGA TGTCTTGGAGACCATCTTTGTCCGAAAAGTGGGGGCTTTTGTCAACAAACCCATTAACCAGGTGACCCTG ACGAGTTTGGATATACCCTTTGCCATGTTTGCTCCCAAGAATTTGGAGCTGGAGGATACCGATCCAATGG TGAATCCTCCAGATTCCCCAGAGACTGAATCTCCTCTCCAGGGCAGCCTGCACTCAGATGGCTCCAGCGG GGGCAGCAGTGGCAATACCCATGATGACTTTGTTATGATAGACTTTAAACCAGCTTTTTCTAAAGATGAC ATTCTTCCGATGGACCTGGGGACCTTCTATCGGGAGTTTCAGAACCCACCTCAGCTGAGCAGCCTCTCCA TAGATATTGGAGCACAGTCCATGGCTGAAGACTTGGACTCATTACCAGAGAAGCTGGCTGTGCATGAGAA GAATGTCCGCGAGTTTGATGCCTTTGTGGAAACCCTGCAGTAA
Translation (480 aa): METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALA GQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRL SRKQGHEYVILYRIYFGEVQLSGLGEGFQTVRVGTVGTPVGTITLSCAYRINLAFMSTRQFERTPPIMGI IIDHFVDRPYPSSSPMHPCNYRTAGEDTGVIYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVPLAPNQP VHGTQADQERLATCTPSDRTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL TSLDIPFAMFAPKNLELEDTDPMVNPPDSPETESPLQGSLHSDGSSGGSSGNTHDDFVMIDFKPAFSKDD ILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ
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