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Report for CCDS41688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41688.1 Public Homo sapiens 11 STARD10 24 110 108 CCDS HistoryNCBI Gene:10809Re-query CCDS DB by CCDS ID:41688.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334805.11 ENSP00000335247.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334805.11Link to Ensembl Protein Viewer:ENSP00000335247.6Re-query CCDS DB by Nucleotide ID:ENST00000334805Re-query CCDS DB by Protein ID:ENSP00000335247
Original member Current member EBI ENST00000543304.5 ENSP00000438792.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543304.5Link to Ensembl Protein Viewer:ENSP00000438792.1Re-query CCDS DB by Nucleotide ID:ENST00000543304Re-query CCDS DB by Protein ID:ENSP00000438792
Original member Current member NCBI NM_006645.3 NP_006636.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006645.3Link to Protein Sequence:NP_006636.2Re-query CCDS DB by Nucleotide ID:NM_006645Re-query CCDS DB by Protein ID:NP_006636Link to BLAST:NP_006636.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006636.2 291 Q9Y365 291 100% 0 0

Chromosomal Locations for CCDS 41688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72754897 72755142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72755701 72755753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72757767 72757884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72758530 72758633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72759234 72759381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72780975 72781181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGAGAAGCTGGCGGCCTCTACAGAGCCCCAAGGGCCTCGGCCGGTCCTGGGCCGTGAGAGTGTCCAGG
TGCCCGATGACCAAGACTTTCGCAGCTTCCGGTCAGAGTGTGAGGCTGAGGTGGGCTGGAACCTGACCTA
TAGCAGGGCTGGGGTGTCTGTCTGGGTGCAGGCTGTGGAGATGGATCGGACGCTGCACAAGATCAAGTGC
CGGATGGAGTGCTGTGATGTGCCAGCCGAGACACTCTACGACGTCCTACACGACATTGAGTACCGCAAGA
AATGGGACAGCAACGTCATTGAGACTTTTGACATCGCCCGCTTGACAGTCAACGCTGACGTGGGCTATTA
CTCCTGGAGGTGTCCCAAGCCCCTGAAGAACCGTGATGTCATCACCCTCCGCTCCTGGCTCCCCATGGGC
GCTGATTACATCATTATGAACTACTCAGTCAAACATCCCAAATACCCACCTCGGAAAGACTTGGTCCGAG
CTGTGTCCATCCAGACGGGCTACCTCATCCAGAGCACAGGGCCCAAGAGCTGCGTCATCACCTACCTGGC
CCAGGTGGACCCCAAAGGCTCCTTACCCAAGTGGGTGGTGAATAAATCTTCTCAGTTCCTGGCTCCCAAG
GCCATGAAGAAGATGTACAAGGCGTGCCTCAAGTACCCCGAGTGGAAACAGAAGCACCTGCCTCACTTCA
AGCCGTGGCTGCACCCGGAGCAGAGCCCGTTGCCGAGCCTGGCGCTGTCGGAGCTGTCGGTGCAGCATGC
GGACTCACTGGAGAACATCGACGAGAGCGCGGTGGCCGAGAGCAGAGAGGAGCGGATGGGCGGCGCGGGC
GGCGAGGGCAGCGACGACGACACCTCGCTCACCTGA

Translation (291 aa):
MEKLAASTEPQGPRPVLGRESVQVPDDQDFRSFRSECEAEVGWNLTYSRAGVSVWVQAVEMDRTLHKIKC
RMECCDVPAETLYDVLHDIEYRKKWDSNVIETFDIARLTVNADVGYYSWRCPKPLKNRDVITLRSWLPMG
ADYIIMNYSVKHPKYPPRKDLVRAVSIQTGYLIQSTGPKSCVITYLAQVDPKGSLPKWVVNKSSQFLAPK
AMKKMYKACLKYPEWKQKHLPHFKPWLHPEQSPLPSLALSELSVQHADSLENIDESAVAESREERMGGAG
GEGSDDDTSLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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