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Report for CCDS43390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43390.1 Public Homo sapiens 5 FAXDC2 24 110 108 CCDS HistoryNCBI Gene:10826Re-query CCDS DB by CCDS ID:43390.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43390.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326080.10 ENSP00000320604.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326080.10Link to Ensembl Protein Viewer:ENSP00000320604.5Re-query CCDS DB by Nucleotide ID:ENST00000326080Re-query CCDS DB by Protein ID:ENSP00000320604
Original member Current member NCBI NM_032385.5 NP_115761.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032385.5Link to Protein Sequence:NP_115761.2Re-query CCDS DB by Nucleotide ID:NM_032385Re-query CCDS DB by Protein ID:NP_115761Link to BLAST:NP_115761.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115761.2 333 Q96IV6-1 333 100% 0 0

Chromosomal Locations for CCDS 43390.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 154820316 154820472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154821260 154821426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154822472 154822577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154823387 154823592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154830801 154830922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154834625 154834728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154834843 154834934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154838131 154838178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGAAAGGAGAAGCTGGACATATGCTACACAATGAAAAGTCAAAGCAGGAGGGACACATCTGGGGCTCTA
TGAGGAGGACAGCTTTCATCCTGGGCTCTGGACTTCTCTCATTTGTGGCCTTCTGGAACTCAGTGACATG
GCATCTTCAGAGATTTTGGGGTGCTTCTGGCTACTTTTGGCAAGCCCAGTGGGAGAGGCTGCTGACTACA
TTTGAAGGGAAGGAGTGGATCCTCTTCTTTATAGGTGCCATCCAAGTGCCTTGTCTCTTCTTCTGGAGCT
TCAATGGGCTTCTATTGGTGGTTGACACAACAGGAAAACCTAACTTCATCTCTCGCTACCGAATTCAGGT
CGGCAAGAATGAACCTGTGGATCCTGTGAAACTGCGCCAGTCTATCCGCACAGTTCTTTTCAACCAGTGC
ATGATATCTTTCCCCATGGTGGTCTTCCTCTATCCCTTCCTCAAATGGTGGAGAGACCCCTGCCGCCGTG
AGCTACCCACCTTCCACTGGTTCCTCCTGGAGCTGGCCATCTTCACGCTGATCGAGGAAGTCTTGTTCTA
CTATTCACACCGGCTCCTTCACCACCCAACATTCTACAAGAAAATCCACAAGAAACACCATGAGTGGACA
GCTCCCATTGGCGTGATCTCTCTCTATGCCCACCCTATAGAGCATGCAGTCTCCAACATGCTACCGGTGA
TAGTGGGCCCATTAGTAATGGGCTCCCACTTGTCCTCCATCACCATGTGGTTTTCCTTGGCCCTCATCAT
CACCACCATCTCCCACTGTGGCTACCACCTTCCCTTCCTGCCTTCGCCTGAATTCCACGACTACCACCAT
CTCAAGTTCAACCAGTGCTATGGGGTGCTGGGTGTGCTGGACCACCTCCATGGGACTGACACCATGTTCA
AGCAGACCAAGGCCTACGAGAGACATGTCCTCCTGCTGGGCTTCACCCCGCTCTCTGAGAGCATCCCAGA
CTCCCCAAAGAGGATGGAGTGA

Translation (333 aa):
MKGEAGHMLHNEKSKQEGHIWGSMRRTAFILGSGLLSFVAFWNSVTWHLQRFWGASGYFWQAQWERLLTT
FEGKEWILFFIGAIQVPCLFFWSFNGLLLVVDTTGKPNFISRYRIQVGKNEPVDPVKLRQSIRTVLFNQC
MISFPMVVFLYPFLKWWRDPCRRELPTFHWFLLELAIFTLIEEVLFYYSHRLLHHPTFYKKIHKKHHEWT
APIGVISLYAHPIEHAVSNMLPVIVGPLVMGSHLSSITMWFSLALIITTISHCGYHLPFLPSPEFHDYHH
LKFNQCYGVLGVLDHLHGTDTMFKQTKAYERHVLLLGFTPLSESIPDSPKRME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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