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Report for CCDS29892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29892.1 Public Mus musculus 19 Stn1 23 108 98 CCDS HistoryNCBI Gene:108689Re-query CCDS DB by CCDS ID:29892.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049369.15 ENSMUSP00000040944.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049369.15Link to Ensembl Protein Viewer:ENSMUSP00000040944.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049369Re-query CCDS DB by Protein ID:ENSMUSP00000040944
Original member Current member NCBI NM_175360.3 NP_780569.1 Accepted alive Link to Nucleotide Sequence:NM_175360.3Link to Protein Sequence:NP_780569.1Re-query CCDS DB by Nucleotide ID:NM_175360Re-query CCDS DB by Protein ID:NP_780569Link to BLAST:NP_780569.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780569.1 378 Q8K2X3 378 100% 0 0

Chromosomal Locations for CCDS 29892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47501560 47501717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47507806 47507878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47510335 47510457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47513811 47513982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47516091 47516214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47517027 47517194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47524687 47524755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47528637 47528732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47536196 47536349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGCCACAGCCCTGCCTCTTGATGGAGTGTGAATCCAGTCCAAGGGAAGAGGAGATCCCGCCCCTCTTTT
GGGGTCTGGATCCTGTGTTTCTAGCCTTTGCAAAACTCTACATCAAGGATATCCTGGAGATGAAGGAGTC
CCAACAAGTGCCAGGTACATATTTTTACAACGGGCATCCAATAAGGCGGGTAGATATCATGGGAGCTGTC
ATCAGCGTGAAAGAAAGAGAGACTTTCTACAGCTACGGAGTGGACGATGCCACTGGGGTTATAAACTGCG
TCTGCTGGAAGAAGCTGAGCAACGCTGAGTCTTCCTCAGACCCAGCTATTCTGAGCACTGCGAGAGAGCT
TAGCATGACATCACAGCTTAAGAAGCTGCAGGAGACCATCGAGCAGAAAACCAGGATAGGGATTGGAGAT
ATCATCCGAGTCCGAGGCTCTGTGCGCATGTTCCGAGAAGAGCGAGAGATCTGTGCCAACATTTATTATA
AGGTGGACGATCCAGTGTGGAACATGCAAATCGCAAGGATGCTTGAGCTGCCCAAGCTCTACCAGAAGGT
GTACGACCAGCCCTTCCGTAACCCAGCCCTACAGGAGGAGGAGGCACTAAACAATAAAGACAATTTGGAT
CTCGCTGGCCTCACGTCTTTGCTGAGTGAGAAAATTAAAGAATTCCTCCAGGAGAAGAAAATGCAAAGCT
TCTACCAGCAGGAGTTAGAGACAGTGGAGTCTTTGCAGTCTCTGGCCAGTCGGCCTGTGACCCACAGCAC
GGGCTCGGACCAAGTGGAGTTAAAGGACAGTGGCACTTCTGGCGTAGCGCAGAGAGTGTTTAAGAATGCT
CTCCAGCTGCTTCAGGAAAAAGGACTCGTGTTCCAGAGAGACAGTGGCTCTGATAAGCTGTACTACGTAA
CCACCAAAGACAAAGACCTGCAGCAGAAGATCTACCACATCATTAAGGAAGACTGTCAGAAACCAAACCA
TATGGAGAAGGGCTGCCACCTGCTACACATCCTGAACTGTGTGCACCTCAACCTCCGCTGGGACCTGAGC
AAGGCTGTGCTGCAGCGGGTGCTGGAGCTCCTGGAGGACCAGAGTGACATCGTCAGCACCGCGGACCACT
ACTACGCGGCCTTCTGA

Translation (378 aa):
MPQPCLLMECESSPREEEIPPLFWGLDPVFLAFAKLYIKDILEMKESQQVPGTYFYNGHPIRRVDIMGAV
ISVKERETFYSYGVDDATGVINCVCWKKLSNAESSSDPAILSTARELSMTSQLKKLQETIEQKTRIGIGD
IIRVRGSVRMFREEREICANIYYKVDDPVWNMQIARMLELPKLYQKVYDQPFRNPALQEEEALNNKDNLD
LAGLTSLLSEKIKEFLQEKKMQSFYQQELETVESLQSLASRPVTHSTGSDQVELKDSGTSGVAQRVFKNA
LQLLQEKGLVFQRDSGSDKLYYVTTKDKDLQQKIYHIIKEDCQKPNHMEKGCHLLHILNCVHLNLRWDLS
KAVLQRVLELLEDQSDIVSTADHYYAAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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