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Report for CCDS18023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18023.1 Public Mus musculus 4 Pnrc1 23 108 98 CCDS HistoryNCBI Gene:108767Re-query CCDS DB by CCDS ID:18023.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049357.9 ENSMUSP00000040377.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049357.9Link to Ensembl Protein Viewer:ENSMUSP00000040377.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000049357Re-query CCDS DB by Protein ID:ENSMUSP00000040377
Original member Current member NCBI NM_001033225.2 NP_001028397.2 Accepted alive Link to Nucleotide Sequence:NM_001033225.2Link to Protein Sequence:NP_001028397.2Re-query CCDS DB by Nucleotide ID:NM_001033225Re-query CCDS DB by Protein ID:NP_001028397Link to BLAST:NP_001028397.2

Chromosomal Locations for CCDS 18023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 33246064 33246507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33247948 33248397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGACCGTCGTCTCCGTCCCACAGCGAGATCTCGCTCTGAGCGGCCGCTTAGCGCCGCTCGGGTTCCTCG
GG
GCCCTCCCGATGGTGAACCCGGCCCCGCCGCCCTTGCCGCGCCTTCCGGACCCGCGCGCGCTGCCACC
C
ACCCTCTTCCTGCCGCACTTCCTCGGGGGGGACGGGCCGTGCCTGGCGCCCGCGCCTCGCACCACCGCG
CCG
TCCGGCTGCACCTTGGCCCCGGCGGCTGCCCCGCGGGCGGCGCCCAAGAAGCGGCGGAAGAAAAAGG
TG
CGGGCCAGCCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGA
G
GGTGGTCGCAGCCCGGCGCCGGGGCCAATCGTCGCGCAGGAGGAGCGAGGTCTGGCGGCCACTGCCCTG
CTC
CACAGACAGCCCCCACTCGCGAAGGAGGTTTTAAAATCAAAGATGGGAAAATCGGAGAAAATTGCCC
TT
CCCCACAGCCAGCTTGTGCATGGTATACACTTGTGTGAACAACCAAAGATAAACAGACAGAAAAGCAA
A
TACAACTTGCCACTAACCAAGATCACCTCTGCAAAAAGGAATGAAAGTGACTTTTGGCAGGATTCTGCT
TCC
TCCGATCGAATGCAGAAGCAGGAAAAAAAGTCTTTTAAAAATACTGAGAACATTAAAAGTAACCATT
TG
AAGAAATCAGCATTTCTAACAGAAGTGAGCCAAAAGGAAAATTACGCCGGAGCAAAGTTCAGTGACCC
A
CCTTCCCCTAGTGTCCTCCCAAAGCCTCCGAGTCACTGGATGGGAAGTACCGCCGAGAACCCCAGCCAG
AGC
CGGGAGCTGATGGCAGTGCACTTGAAAACGCTCCTCAAGGTGCAGACCTAG


Translation (297 aa):
MTVVSVPQRDLALSGRLAPLGFLGALPMVNPAPPPLPRLPDPRALPPTLFLPHFLGGDGPCLAPAPRTTA
P
SGCTLAPAAAPRAAPKKRRKKKVRASPAGQLPSRFHQFQQHRPSLEGGRSPAPGPIVAQEERGLAATAL
L
HRQPPLAKE
VLKSKMGKSEKIALPHSQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNESDFWQDSA
S
SDRMQKQEKKSFKNTENIKSNHLKKSAFLTEVSQKENYAGAKFSDPPSPSVLPKPPSHWMGSTAENPSQ
S
RELMAVHLKTLLKVQT




Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser