NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3951.1 Public Homo sapiens 5 MRPS30 24 110 108 CCDS HistoryNCBI Gene:10884Re-query CCDS DB by CCDS ID:3951.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3951.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507110.6 ENSP00000424328.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000507110.6Link to Ensembl Protein Viewer:ENSP00000424328.1Re-query CCDS DB by Nucleotide ID:ENST00000507110Re-query CCDS DB by Protein ID:ENSP00000424328
Original member Current member NCBI NM_016640.4 NP_057724.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016640.4Link to Protein Sequence:NP_057724.2Re-query CCDS DB by Nucleotide ID:NM_016640Re-query CCDS DB by Protein ID:NP_057724Link to BLAST:NP_057724.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057724.2 439 Q9NP92 439 100% 0 0

Chromosomal Locations for CCDS 3951.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 44808963 44809563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44811009 44811154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44811915 44812020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44813106 44813282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44814913 44815202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGCGGCGGCCAGGTGTTGGAGGCCTTTGCTACGCGGTCCGAGGCTTTCATTGCACACCGCGGCTAATG
CCGCCGCCACGGCTACAGAAACGACCTGCCAAGACGTCGCGGCGACCCCCGTCGCGCGGTACCCGCCGAT
TGTGGCCTCCATGACAGCCGACAGCAAAGCTGCACGGCTGCGGCGGATCGAGCGCTGGCAGGCGACGGTG
CACGCTGCGGAGTCGGTAGACGAGAAGCTGCGAATCCTCACCAAGATGCAGTTTATGAAGTACATGGTTT
ACCCGCAGACCTTCGCGCTGAATGCCGACCGCTGGTACCAGTACTTCACCAAGACCGTGTTCCTGTCGGG
TCTGCCGCCGCCCCCAGCGGAGCCCGAGCCCGAGCCCGAACCCGAACCTGAACCTGCGCTGGACCTCGCG
GCGCTGCGTGCGGTCGCCTGCGACTGCCTGCTGCAGGAGCACTTCTACCTGCGGCGCAGGCGGCGCGTGC
ACCGTTACGAGGAGAGCGAGGTCATATCTTTGCCCTTCCTGGATCAGCTGGTGTCAACCCTCGTGGGCCT
CCTCAGCCCACACAACCCGGCCCTGGCCGCTGCCGCCCTCGATTATAGATGCCCAGTTCATTTTTACTGG
GTGCGTGGTGAAGAAATTATTCCTCGTGGTCATCGAAGAGGTCGAATTGATGACTTGCGATACCAGATAG
ATGATAAACCAAACAACCAGATTCGAATATCCAAGCAACTCGCAGAGTTTGTGCCATTGGATTATTCTGT
TCCTATAGAAATCCCCACTATAAAATGTAAACCAGACAAACTTCCATTATTCAAACGGCAGTATGAAAAC
CACATATTTGTTGGCTCAAAAACTGCAGATCCTTGCTGTTACGGTCACACCCAGTTTCATCTGTTACCTG
ACAAATTAAGAAGGGAAAGGCTTTTGAGACAAAACTGTGCTGATCAGATAGAAGTTGTTTTTAGAGCTAA
TGCTATTGCAAGCCTTTTTGCTTGGACTGGAGCACAAGCTATGTATCAAGGATTCTGGAGTGAAGCAGAT
GTTACTCGACCTTTTGTCTCCCAGGCTGTGATCACAGATGGAAAATACTTTTCCTTTTTCTGCTACCAGC
TAAATACTTTGGCACTGACTACACAAGCTGATCAAAATAACCCTCGTAAAAATATATGTTGGGGTACACA
AAGTAAGCCTCTTTATGAAACAATTGAGGATAATGATGTGAAAGGTTTTAATGATGATGTTCTACTTCAG
ATAGTTCACTTTCTACTGAATAGACCAAAAGAAGAAAAATCACAGCTGTTGGAAAACTGA

Translation (439 aa):
MAAARCWRPLLRGPRLSLHTAANAAATATETTCQDVAATPVARYPPIVASMTADSKAARLRRIERWQATV
HAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLPPPPAEPEPEPEPEPEPALDLA
ALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYRCPVHFYW
VRGEEIIPRGHRRGRIDDLRYQIDDKPNNQIRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYEN
HIFVGSKTADPCCYGHTQFHLLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQGFWSEAD
VTRPFVSQAVITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQ
IVHFLLNRPKEEKSQLLEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH