NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13340.1 Public Homo sapiens 20 TOMM34 24 110 108 CCDS HistoryNCBI Gene:10953Re-query CCDS DB by CCDS ID:13340.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372813.4 ENSP00000361900.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372813.4Link to Ensembl Protein Viewer:ENSP00000361900.3Re-query CCDS DB by Nucleotide ID:ENST00000372813Re-query CCDS DB by Protein ID:ENSP00000361900
Original member Current member NCBI NM_006809.5 NP_006800.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006809.5Link to Protein Sequence:NP_006800.2Re-query CCDS DB by Nucleotide ID:NM_006809Re-query CCDS DB by Protein ID:NP_006800Link to BLAST:NP_006800.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006800.2 309 Q15785 309 100% 0 0

Chromosomal Locations for CCDS 13340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 44943109 44943213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44943453 44943579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44948730 44948877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44951833 44952002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44955068 44955220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44956386 44956485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44960207 44960333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGCCCCCAAATTCCCAGACTCTGTGGAGGAGCTCCGCGCCGCCGGCAATGAGAGTTTCCGCAACGGCC
AGTACGCCGAGGCCTCCGCGCTCTACGGCCGCGCGCTGCGGGTGCTGCAGGCGCAAGGTTCTTCAGACCC
AGAAGAAGAAAGTGTTCTCTACTCCAACCGAGCAGCATGTCACTTGAAGGATGGAAACTGCAGAGACTGC
ATCAAAGATTGCACTTCAGCACTGGCCTTGGTTCCCTTCAGCATTAAGCCCCTGCTGCGGCGAGCATCTG
CTTATGAGGCTCTGGAGAAGTACCCTATGGCCTATGTTGACTATAAGACTGTGCTGCAGATTGATGATAA
TGTGACGTCAGCCGTAGAAGGCATCAACAGAATGACCAGAGCTCTCATGGACTCGCTTGGGCCTGAGTGG
CGCCTGAAGCTGCCCTCAATCCCCTTGGTGCCTGTTTCAGCTCAGAAGAGGTGGAATTCCTTGCCTTCGG
AGAACCACAAAGAGATGGCTAAAAGCAAATCCAAAGAAACCACAGCTACAAAGAACAGAGTGCCTTCTGC
TGGGGATGTGGAGAAAGCCAGAGTTCTGAAGGAAGAAGGCAATGAGCTTGTAAAGAAGGGAAACCATAAG
AAAGCTATTGAGAAGTACAGTGAAAGCCTCTTGTGTAGTAACCTGGAATCTGCCACGTACAGCAACAGAG
CACTCTGCTATTTGGTCCTGAAGCAGTACACAGAAGCAGTGAAGGACTGCACAGAAGCCCTCAAGCTGGA
TGGAAAGAACGTGAAGGCATTCTACAGACGGGCTCAAGCCCACAAAGCACTCAAGGACTATAAATCCAGC
TTTGCAGACATCAGCAACCTCCTACAGATTGAGCCTAGGAATGGTCCTGCACAGAAGTTGCGGCAGGAAG
TGAAGCAGAACCTACACTAA

Translation (309 aa):
MAPKFPDSVEELRAAGNESFRNGQYAEASALYGRALRVLQAQGSSDPEEESVLYSNRAACHLKDGNCRDC
IKDCTSALALVPFSIKPLLRRASAYEALEKYPMAYVDYKTVLQIDDNVTSAVEGINRMTRALMDSLGPEW
RLKLPSIPLVPVSAQKRWNSLPSENHKEMAKSKSKETTATKNRVPSAGDVEKARVLKEEGNELVKKGNHK
KAIEKYSESLLCSNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSS
FADISNLLQIEPRNGPAQKLRQEVKQNLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH