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Report for CCDS11816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11816.1 Public Homo sapiens 17 RAB40B 24 110 108 CCDS HistoryNCBI Gene:10966Re-query CCDS DB by CCDS ID:11816.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11816.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000571995.6 ENSP00000461785.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000571995.6Link to Ensembl Protein Viewer:ENSP00000461785.1Re-query CCDS DB by Nucleotide ID:ENST00000571995Re-query CCDS DB by Protein ID:ENSP00000461785
Original member Current member NCBI NM_006822.3 NP_006813.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006822.3Link to Protein Sequence:NP_006813.1Re-query CCDS DB by Nucleotide ID:NM_006822Re-query CCDS DB by Protein ID:NP_006813Link to BLAST:NP_006813.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006813.1 278 Q12829 278 100% 0 0

Chromosomal Locations for CCDS 11816.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82657863 82658134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82658491 82658713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82659580 82659657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82660987 82661047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82664496 82664556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82698455 82698596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGAGCGCCCTGGGCAGCCCGGTCCGGGCCTACGACTTTCTGCTCAAGTTCCTGCTGGTGGGCGACAGCG
ACGTGGGCAAGGGCGAGATCCTGGCGAGCCTGCAGGATGGCGCGGCCGAGTCCCCGTACGGCCACCCGGC
GGGCATCGACTACAAGACGACCACCATCCTGCTGGACGGGCGGCGGGTGAAGCTGCAGCTCTGGGATACT
TCAGGCCAGGGAAGATTTTGTACCATATTCCGCTCCTACTCCCGGGGCGCACAGGGTGTGATCCTGGTCT
ATGACATTGCGAACCGCTGGTCTTTTGACGGCATTGATCGATGGATTAAGGAGATCGATGAGCATGCCCC
CGGAGTCCCCAAGATCCTGGTGGGGAACCGCCTGCACCTGGCGTTCAAGCGGCAGGTGCCCACGGAGCAG
GCCCAGGCCTACGCCGAGCGCCTGGGCGTGACCTTCTTTGAGGTCAGCCCTCTGTGCAATTTCAACATCA
CAGAGTCGTTCACGGAGCTGGCCAGGATCGTGCTGCTGCGGCATGGGATGGACCGGCTCTGGCGGCCGAG
CAAGGTGCTGAGCTTGCAAGACCTCTGCTGCCGGGCGGTCGTGTCCTGCACGCCGGTGCACCTGGTGGAC
AAGCTCCCGCTCCCCATTGCCTTAAGAAGCCACCTCAAGTCCTTCTCGATGGCCAACGGCCTGAATGCCA
GGATGATGCACGGCGGTTCCTACTCCCTCACCACCAGCTCCACCCACAAAAGGAGCAGCCTCCGCAAAGT
GAAGCTCGTCCGCCCCCCCCAGAGCCCCCCCAAAAACTGCACCAGAAACAGCTGCAAAATTTCTTAA

Translation (278 aa):
MSALGSPVRAYDFLLKFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDYKTTTILLDGRRVKLQLWDT
SGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVPTEQ
AQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGMDRLWRPSKVLSLQDLCCRAVVSCTPVHLVD
KLPLPIALRSHLKSFSMANGLNARMMHGGSYSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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