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Report for CCDS13259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13259.1 Public Homo sapiens 20 SPAG4 24 110 108 CCDS HistoryNCBI Gene:6676Re-query CCDS DB by CCDS ID:13259.1Re-query CCDS DB by GeneID:6676See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13259.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374273.8 ENSP00000363391.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374273.8Link to Ensembl Protein Viewer:ENSP00000363391.3Re-query CCDS DB by Nucleotide ID:ENST00000374273Re-query CCDS DB by Protein ID:ENSP00000363391
Original member Current member NCBI NM_003116.3 NP_003107.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003116.3Link to Protein Sequence:NP_003107.1Re-query CCDS DB by Nucleotide ID:NM_003116Re-query CCDS DB by Protein ID:NP_003107Link to BLAST:NP_003107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003107.1 437 Q9NPE6 437 100% 0 0

Chromosomal Locations for CCDS 13259.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35616004 35616307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35617136 35617240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35617520 35617586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35617779 35617840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35618087 35618130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35618450 35618475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35618612 35618720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35618923 35618998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35619195 35619310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35619579 35619746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35620684 35620773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35620876 35621022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGCGGCGAAGCTCCCGCCCGGGCTCGGCCTCGTCCTCGCGCAAGCACACGCCCAACTTTTTCAGCGAGA
ACAGCTCAATGAGCATCACCTCGGAGGACAGCAAAGGGCTCCGGTCAGCGGAGCCCGGGCCTGGGGAGCC
CGAGGGCAGAAGAGCCCGGGGCCCGAGCTGCGGTGAGCCCGCCTTGAGCGCGGGAGTGCCCGGAGGAACC
ACATGGGCAGGAAGCTCTCAGCAGAAGCCAGCGCCTCGGAGCCACAACTGGCAGACAGCCTGTGGCGCGG
CAACCGTGAGGGGCGGGGCCTCGGAACCGACTGGGTCTCCAGTAGTCTCTGAGGAGCCGCTCGACCTTCT
CCCGACCCTGGATCTGAGGCAGGAGATGCCTCCCCCGCGGGTGTTCAAGAGCTTTCTGAGCCTGCTCTTC
CAGGGGCTGAGCGTGTTGTTATCCCTGGCAGGAGACGTGCTGGTCAGCATGTACAGGGAGGTCTGTTCCA
TCCGCTTCCTGTTCACGGCTGTGTCGCTGCTGAGCCTCTTTCTGTCAGCATTCTGGCTGGGGCTTCTGTA
CCTGGTCTCTCCTTTGGAGAATGAACCTAAGGAGATGCTGACTCTAAGTGAGTACCACGAGCGCGTGCGC
TCCCAGGGGCAGCAGCTGCAGCAGCTCCAGGCCGAGCTGGATAAACTCCACAAGGAGGTGTCCACTGTTC
GGGCAGCCAACAGCGAGAGAGTGGCCAAGCTCGTGTTCCAGAGGCTGAATGAGGATTTTGTGCGGAAGCC
CGACTATGCTTTGAGCTCTGTGGGAGCCTCCATCGACCTGCAGAAGACATCCCACGATTACGCAGACAGG
AACACTGCCTACTTCTGGAATCGCTTCAGCTTCTGGAACTACGCACGGCCGCCCACGGTTATCCTGGAGC
CCCACGTGTTCCCTGGGAATTGCTGGGCTTTTGAAGGCGACCAAGGCCAGGTGGTGATCCAACTGCCGGG
CCGAGTGCAGCTGAGCGACATCACTCTGCAGCATCCACCGCCCAGCGTGGAGCACACCGGAGGAGCCAAC
AGCGCCCCCCGCGATTTCGCGGTCTTTGGCCTCCAGGTTTATGATGAAACTGAAGTTTCCTTGGGGAAAT
TCACCTTCGATGTTGAGAAATCGGAGATTCAGACTTTCCACCTGCAGAATGACCCCCCAGCTGCCTTTCC
CAAGGTGAAGATCCAGATTCTAAGCAACTGGGGCCACCCCCGTTTCACGTGCTTGTATCGAGTCCGTGCC
CACGGTGTGCGAACCTCAGAGGGGGCAGAGGGCAGTGCACAGGGGCCCCATTAA

Translation (437 aa):
MRRSSRPGSASSSRKHTPNFFSENSSMSITSEDSKGLRSAEPGPGEPEGRRARGPSCGEPALSAGVPGGT
TWAGSSQQKPAPRSHNWQTACGAATVRGGASEPTGSPVVSEEPLDLLPTLDLRQEMPPPRVFKSFLSLLF
QGLSVLLSLAGDVLVSMYREVCSIRFLFTAVSLLSLFLSAFWLGLLYLVSPLENEPKEMLTLSEYHERVR
SQGQQLQQLQAELDKLHKEVSTVRAANSERVAKLVFQRLNEDFVRKPDYALSSVGASIDLQKTSHDYADR
NTAYFWNRFSFWNYARPPTVILEPHVFPGNCWAFEGDQGQVVIQLPGRVQLSDITLQHPPPSVEHTGGAN
SAPRDFAVFGLQVYDETEVSLGKFTFDVEKSEIQTFHLQNDPPAAFPKVKIQILSNWGHPRFTCLYRVRA
HGVRTSEGAEGSAQGPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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