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Report for CCDS36119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36119.1 Public Mus musculus 11 Sanbr 23 108 98 CCDS HistoryNCBI Gene:71675Re-query CCDS DB by CCDS ID:36119.1Re-query CCDS DB by GeneID:71675See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043356.12 ENSMUSP00000044265.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043356.12Link to Ensembl Protein Viewer:ENSMUSP00000044265.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043356Re-query CCDS DB by Protein ID:ENSMUSP00000044265
Original member Current member EBI ENSMUST00000109532.8 ENSMUSP00000105158.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109532.8Link to Ensembl Protein Viewer:ENSMUSP00000105158.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109532Re-query CCDS DB by Protein ID:ENSMUSP00000105158
Original member Current member EBI ENSMUST00000180260.7 ENSMUSP00000136118.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180260.7Link to Ensembl Protein Viewer:ENSMUSP00000136118.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180260Re-query CCDS DB by Protein ID:ENSMUSP00000136118
Original member Current member NCBI NM_027860.3 NP_082136.2 Accepted alive Link to Nucleotide Sequence:NM_027860.3Link to Protein Sequence:NP_082136.2Re-query CCDS DB by Nucleotide ID:NM_027860Re-query CCDS DB by Protein ID:NP_082136Link to BLAST:NP_082136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082136.2 718 Q68FF0-1 718 100% 0 0

Chromosomal Locations for CCDS 36119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 23575481 23575517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23576731 23576822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23581596 23581684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23582867 23582940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23583098 23583126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23584520 23584611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23588635 23588734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23589951 23589983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23593426 23593525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23595381 23595526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23606614 23606766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23609001 23609124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23611747 23611857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23611962 23612048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23615096 23615256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23617138 23617196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23620229 23620467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23622436 23622529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23624936 23625122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23628873 23629022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGAGTCGTGGATATCCAGAAAACAATAATTTTCTGAATAATAATAACCAAATGGTATTGGATATGATTC
TTTATCCATTGATTGGAATCCCTCAGACCATCAACTGGGAAACTGTGGCAAGGCTTGTGCCTGGATTAAC
GCCCAAAGAGTGTGTGAAAAGGTTTGATGAGCTAAAGAGCTGTGGAAGTTCACCTGTTGACAACCAGTAT
AACCCTTTAATGGCTACTGGAGAGGGTCCTGTTGAAACTTTAGCCACTTACATTAAATCTTCACTTCTGG
ACACACAAGGAGATTTTCAAGAGACTCCTGTTGATCAAGATACAGTTTCTAAAGCAGGAAGACATAGTAT
AGCTACCACAAGGAATTGCTCTTCAGAAAGTGAAAACTGTACTGCTCGTAATGCTGGAGAAGAGACTGGA
GAATCTGAAGGGCCAAACATGGTGATCCATGTATGTGATGAAGCAAAAAGCTTGAAAGAAGATTTTATTT
GCCCACGAGATCTTTTGATATCAGAAATGAAGTACTTTGCTGAATATTTATCCATGGATGCGCAGCGCTG
GGAAGAAGTGGACATTTCAGTTCATTGCGATGTTCACATTTTCAACTGGCTGATAAAATATGTTAAACGG
AACACTAAGGAGAGTAAAGATTGTGAGATTCCCGCTTTAGAGCCAGGGAATGTCATTTCAATCCTTATTT
CATCAGAGTTCTTGAAGATGGATTCACTAGTTGAACAATGTATTCAATATTGCCATAAAAATATGAATGC
CATAGTAGCTGCTCCATGCAACATGAACTGTATCAATGCAAACCTTCTTACACGCATAGCTGATCTGTTC
ACACACAATGAAATTGATGACTTAAAAGACAAAAAAGATAAGTTTAGGAGTAAACTGTTTTGTAAGAAGA
TTGAAAGACTCTTTGATCCTGAATACTCCAATCCAGATTCTAGAAACAATGCAGCAACACTCTATCGATG
CTGTTTGTGTAAGAAACTTTTAACCAGAGAAACAGAAAGAAGAATTCCTTGCATCCCTGGAAAAATCAAT
GTGGACCGACATGGAAATATTATCTACATCCACATAAGAGATAAAACCTGGGATGTACATGAATATTTGA
ATAGTCTTTTTGAAGAATTAAAATCTTGGAGAGATGTTTATTGGCGTTTGTGGGGCACAGTCAACTGGCT
GACTTGTTCAAGGTGTTACCAGGCTTTTCTCTGTATTGAGTTCTCACATTGTCAGTATCACTCAGAAGTG
GTAGTTTATTCTAGCACAGTAAATTCACTAAACACTGTGGGCACTGGAATTTATCCCTGCTGTAACCAGA
AGGTTCTTCGATTTGATCCTACTCAGCTCACAAAGGGCTGTAAGGTGAGGGACCACATGGTGGTTCTTCA
TGATCAAGGAGAAAATGATGATTCGCCTTCTTGCCCACCTGCTAAAATACTGGATGATCTGCACAAGCAC
AAAGACGTCATTGCTGTGCCTTTTTTAAAAGATGCAGTTAGTGATCCTGGGGTTGGCTCCTGTGATGAAA
AAGGCCTGGAATATGAAATTTTACTGGAACCAAATACACCGTGGGGCTCCAAAACTGGGGAGCTCAATGC
TTTCTTGTCACTGAAAAACTGGACTCTGCAGTTGAAACAACAGTCGCTGTTCTCAGAAGAGGAAGAGTAT
ACCACGGGGTCTGAGGTCACTGAAGATGAAGTCGGTGATGAAGAAGAAATTGCCAAGAAACAAAGGAAAA
AGGAGAAGCCAAAGAAATTTACTAAGCCGCCAAAAAAACAACTGTCCTCACCCTGTTCTCAAAAGAAAGA
GAAGACACTGGAGAAGTCAACTTCTAGAGATGTGTCTCCTTTTGTTGTGAGTATGCAGAAGAATAAATGG
GATGCCTCAAGATCCTTGAGATTCAACCAAGATGCACAAAGAGAAGATGATCAGCGGCGGATGTCTGAAA
TTACAGGGCATCTAATAAAAATGAGATTGGGTGATCTGGACCGAGTCAAGGCAAAGGAATCAAAGGAATT
TGCAGGAGGTATTTATTCTAGGCTTGAAGCACAAGTCAGAGCCTCAGTACCTGTCACTGCCCGGCAGAAC
AGCTCAGACAAAAACCAAAGGTCTAAAAGTCGTTTTGGTCAAGGGCGTCCTGCATAA

Translation (718 aa):
MSRGYPENNNFLNNNNQMVLDMILYPLIGIPQTINWETVARLVPGLTPKECVKRFDELKSCGSSPVDNQY
NPLMATGEGPVETLATYIKSSLLDTQGDFQETPVDQDTVSKAGRHSIATTRNCSSESENCTARNAGEETG
ESEGPNMVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLSMDAQRWEEVDISVHCDVHIFNWLIKYVKR
NTKESKDCEIPALEPGNVISILISSEFLKMDSLVEQCIQYCHKNMNAIVAAPCNMNCINANLLTRIADLF
THNEIDDLKDKKDKFRSKLFCKKIERLFDPEYSNPDSRNNAATLYRCCLCKKLLTRETERRIPCIPGKIN
VDRHGNIIYIHIRDKTWDVHEYLNSLFEELKSWRDVYWRLWGTVNWLTCSRCYQAFLCIEFSHCQYHSEV
VVYSSTVNSLNTVGTGIYPCCNQKVLRFDPTQLTKGCKVRDHMVVLHDQGENDDSPSCPPAKILDDLHKH
KDVIAVPFLKDAVSDPGVGSCDEKGLEYEILLEPNTPWGSKTGELNAFLSLKNWTLQLKQQSLFSEEEEY
TTGSEVTEDEVGDEEEIAKKQRKKEKPKKFTKPPKKQLSSPCSQKKEKTLEKSTSRDVSPFVVSMQKNKW
DASRSLRFNQDAQREDDQRRMSEITGHLIKMRLGDLDRVKAKESKEFAGGIYSRLEAQVRASVPVTARQN
SSDKNQRSKSRFGQGRPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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