NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33119.1 Public Homo sapiens 19 NLRP13 24 110 108 CCDS HistoryNCBI Gene:126204Re-query CCDS DB by CCDS ID:33119.1Re-query CCDS DB by GeneID:126204See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33119.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342929.4 ENSP00000343891.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342929.4Link to Ensembl Protein Viewer:ENSP00000343891.3Re-query CCDS DB by Nucleotide ID:ENST00000342929Re-query CCDS DB by Protein ID:ENSP00000343891
Original member Current member NCBI NM_176810.2 NP_789780.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_176810.2Link to Protein Sequence:NP_789780.2Re-query CCDS DB by Nucleotide ID:NM_176810Re-query CCDS DB by Protein ID:NP_789780Link to BLAST:NP_789780.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789780.2 1043 Q86W25 1043 100% 0 0

Chromosomal Locations for CCDS 33119.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55895945 55896119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55898770 55898937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55902035 55902205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55904942 55905112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55907792 55907956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55910563 55910733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55911706 55913293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55923914 55923979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55924590 55924658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55924967 55925035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55931993 55932311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3132 nt):
ATGAACTTTTCTGTAATCACCTGCCCCAACGGTGGTACCAACCAAGGGCTTCTGCCTTACCTGATGGCCC
TGGATCAGTATCAGCTGGAGGAATTCAAGCTTTGCTTGGAACCCCAGCAGCTGATGGACTTCTGGTCGGC
CCCCCAGGGGCACTTCCCGCGTATCCCCTGGGCAAACTTGAGAGCTGCCGACCCTTTGAATCTGTCCTTT
CTTTTGGATGAACACTTCCCAAAAGGTCAGGCATGGAAAGTGGTCCTCGGCATCTTCCAGACAATGAATC
TGACCTCACTGTGTGAGAAAGTTAGAGCCGAGATGAAAGAGAATGTGCAGACCCAAGAGCTGCAAGATCC
AACCCAGGAAGATCTAGAGATGCTAGAAGCAGCAGCAGGGAATATGCAGACCCAGGGATGCCAAGATCCA
AACCAAGAAGAACTAGACGAGCTAGAAGAAGAAACAGGGAATGTACAGGCCCAGGGATGCCAAGATCCAA
ACCAAGAAGAACCAGAGATGCTAGAGGAAGCAGACCACAGAAGAAAATACAGAGAGAACATGAAGGCTGA
ACTACTGGAGACATGGGACAACATCAGTTGGCCTAAAGACCACGTATATATCCGTAATACATCAAAGGAC
GAACATGAGGAACTGCAGCGCCTACTGGATCCTAATAGGACTAGAGCCCAGGCCCAGACGATAGTCTTGG
TGGGGAGGGCAGGGGTTGGGAAGACCACCTTGGCAATGCAGGCTATGCTGCACTGGGCAAATGGAGTTCT
CTTTCAGCAAAGGTTCTCCTATGTTTTCTATCTCAGCTGCCATAAAATAAGGTACATGAAGGAAACTACC
TTTGCTGAATTGATTTCTTTGGATTGGCCCGATTTTGATGCCCCCATTGAAGAGTTCATGTCTCAACCAG
AGAAGCTCCTGTTTATTATTGATGGCTTTGAGGAAATAATCATATCTGAGTCACGCTCTGAGAGCTTGGA
TGATGGCTCGCCATGTACAGACTGGTACCAGGAGCTCCCAGTGACCAAAATCCTACACAGCTTGTTGAAG
AAAGAATTGGTTCCCCTGGCTACCTTACTGATCACGATCAAGACCTGGTTTGTGAGAGATCTTAAGGCCT
CATTAGTGAATCCATGCTTTGTACAAATTACAGGGTTCACAGGGGACGACCTACGGGTATATTTCATGAG
ACACTTTGATGACTCAAGTGAAGTTGAGAAAATCCTGCAGCAGCTAAGAAAAAACGAAACTCTCTTTCAT
TCCTGCAGTGCCCCCATGGTGTGTTGGACCGTATGTTCCTGTCTGAAGCAGCCGAAGGTGAGGTATTACG
ATCTCCAGTCAATCACTCAGACTACCACCAGTCTGTATGCCTATTTTTTCTCCAACTTGTTCTCCACAGC
AGAGGTAGATTTGGCAGATGACAGCTGGCCAGGACAATGGAGGGCCCTCTGCAGTCTGGCCATAGAAGGG
CTGTGGTCTATGAACTTCACGTTTAACAAAGAAGACACTGAGATCGAGGGCCTGGAAGTGCCTTTCATTG
ATTCTCTCTACGAGTTCAATATTCTTCAAAAGATCAATGACTGTGGGGGTTGCACTACTTTCACCCACCT
AAGTTTCCAGGAGTTTTTTGCAGCCATGTCCTTTGTGCTAGAGGAACCTAGAGAATTCCCTCCCCATTCC
ACAAAGCCACAAGAGATGAAGATGTTACTGCAACACGTCTTGCTTGACAAAGAAGCCTACTGGACTCCAG
TGGTTCTGTTCTTCTTTGGTCTTTTAAATAAAAACATAGCAAGAGAACTGGAAGATACTTTGCATTGTAA
AATATCTCCCAGGGTAATGGAGGAATTATTAAAGTGGGGAGAAGAGTTAGGTAAGGCTGAAAGTGCCTCT
CTCCAATTTCACATTCTACGACTTTTTCACTGCCTACACGAGTCCCAGGAGGAAGACTTCACAAAGAAGA
TGTTGGGTCGTATCTTTGAAGTTGACCTTAATATTTTGGAGGACGAAGAACTCCAAGCTTCTTCATTTTG
CCTAAAGCACTGTAAAAGGTTAAATAAGCTAAGGCTTTCTGTTAGCAGTCACATCCTTGAAAGGGACTTG
GAAATTCTGGAGACAAGCAAGTTTGATTCCAGGATGCACGCATGGAACAGCATTTGCTCTACGTTGGTCA
CAAATGAGAATCTGCATGAGCTAGACCTGAGTAACAGCAAACTTCATGCTTCCTCTGTGAAGGGTCTCTG
TCTTGCACTGAAAAATCCAAGATGCAAAGTCCAGAAACTGACGTGCAAATCGGTAACTCCTGAGTGGGTT
CTGCAGGACCTCATTATTGCCCTTCAGGGTAACAGCAAGCTGACCCATCTGAACTTCAGCTCTAACAAGC
TGGGAATGACTGTCCCCCTGATTCTTAAAGCTTTGAGACACTCAGCTTGCAACCTCAAGTATCTGTGCCT
GGAGAAATGCAACTTGTCGGCAGCCAGCTGTCAGGACCTAGCCTTGTTTCTCACCAGCATCCAACACGTA
ACTCGATTGTGCCTGGGATTTAATCGGCTCCAAGATGATGGCATAAAGCTATTGTGTGCGGCCCTGACTC
ACCCCAAGTGTGCCTTAGAGAGACTGGAGCTCTGGTTTTGCCAGCTGGCAGCACCCGCTTGCAAGCACTT
GTCAGATGCTCTCCTGCAGAACAGGAGCCTGACACACCTGAATCTGAGCAAGAACAGCCTGAGAGACGAG
GGAGTCAAGTTCCTGTGTGAGGCCTTGGGTCGCCCAGATGGTAACCTGCAGAGCCTGAATTTGTCAGGTT
GTTCTTTCACAAGAGAGGGCTGTGGAGAGCTGGCTAATGCCCTCAGCCATAATCATAATGTGAAAATCTT
GGATTTGGGAGAAAATGATCTTCAGGATGATGGAGTGAAGCTACTGTGTGAGGCTCTGAAACCACATCGT
GCATTGCACACACTTGGGTTGGCGAAATGCAATCTGACAACTGCTTGCTGCCAGCATCTCTTCTCTGTTC
TCAGCAGCAGTAAGAGCCTGGTCAATCTGAACCTTCTAGGCAATGAATTGGATACTGATGGTGTCAAGAT
GCTATGTAAGGCTTTGAAAAAGTCGACATGCAGGCTGCAGAAACTCGGGTAA

Translation (1043 aa):
MNFSVITCPNGGTNQGLLPYLMALDQYQLEEFKLCLEPQQLMDFWSAPQGHFPRIPWANLRAADPLNLSF
LLDEHFPKGQAWKVVLGIFQTMNLTSLCEKVRAEMKENVQTQELQDPTQEDLEMLEAAAGNMQTQGCQDP
NQEELDELEEETGNVQAQGCQDPNQEEPEMLEEADHRRKYRENMKAELLETWDNISWPKDHVYIRNTSKD
EHEELQRLLDPNRTRAQAQTIVLVGRAGVGKTTLAMQAMLHWANGVLFQQRFSYVFYLSCHKIRYMKETT
FAELISLDWPDFDAPIEEFMSQPEKLLFIIDGFEEIIISESRSESLDDGSPCTDWYQELPVTKILHSLLK
KELVPLATLLITIKTWFVRDLKASLVNPCFVQITGFTGDDLRVYFMRHFDDSSEVEKILQQLRKNETLFH
SCSAPMVCWTVCSCLKQPKVRYYDLQSITQTTTSLYAYFFSNLFSTAEVDLADDSWPGQWRALCSLAIEG
LWSMNFTFNKEDTEIEGLEVPFIDSLYEFNILQKINDCGGCTTFTHLSFQEFFAAMSFVLEEPREFPPHS
TKPQEMKMLLQHVLLDKEAYWTPVVLFFFGLLNKNIARELEDTLHCKISPRVMEELLKWGEELGKAESAS
LQFHILRLFHCLHESQEEDFTKKMLGRIFEVDLNILEDEELQASSFCLKHCKRLNKLRLSVSSHILERDL
EILETSKFDSRMHAWNSICSTLVTNENLHELDLSNSKLHASSVKGLCLALKNPRCKVQKLTCKSVTPEWV
LQDLIIALQGNSKLTHLNFSSNKLGMTVPLILKALRHSACNLKYLCLEKCNLSAASCQDLALFLTSIQHV
TRLCLGFNRLQDDGIKLLCAALTHPKCALERLELWFCQLAAPACKHLSDALLQNRSLTHLNLSKNSLRDE
GVKFLCEALGRPDGNLQSLNLSGCSFTREGCGELANALSHNHNVKILDLGENDLQDDGVKLLCEALKPHR
ALHTLGLAKCNLTTACCQHLFSVLSSSKSLVNLNLLGNELDTDGVKMLCKALKKSTCRLQKLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH