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Report for CCDS2827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2827.1 Public Homo sapiens 3 CYB561D2 24 110 108 CCDS HistoryNCBI Gene:11068Re-query CCDS DB by CCDS ID:2827.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2827.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232508.9 ENSP00000232508.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000232508.9Link to Ensembl Protein Viewer:ENSP00000232508.5Re-query CCDS DB by Nucleotide ID:ENST00000232508Re-query CCDS DB by Protein ID:ENSP00000232508
Original member Current member EBI ENST00000418577.1 ENSP00000391209.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418577.1Link to Ensembl Protein Viewer:ENSP00000391209.1Re-query CCDS DB by Nucleotide ID:ENST00000418577Re-query CCDS DB by Protein ID:ENSP00000391209
Original member Current member EBI ENST00000425346.6 ENSP00000400454.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000425346.6Link to Ensembl Protein Viewer:ENSP00000400454.1Re-query CCDS DB by Nucleotide ID:ENST00000425346Re-query CCDS DB by Protein ID:ENSP00000400454
Original member Current member EBI ENST00000424512.5 ENSP00000410663.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424512.5Link to Ensembl Protein Viewer:ENSP00000410663.1Re-query CCDS DB by Nucleotide ID:ENST00000424512Re-query CCDS DB by Protein ID:ENSP00000410663
Original member Current member NCBI NM_001291284.2 NP_001278213.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001291284.2Link to Protein Sequence:NP_001278213.1Re-query CCDS DB by Nucleotide ID:NM_001291284Re-query CCDS DB by Protein ID:NP_001278213Link to BLAST:NP_001278213.1
Original member Current member NCBI NM_007022.5 NP_008953.1 Accepted alive Link to Nucleotide Sequence:NM_007022.5Link to Protein Sequence:NP_008953.1Re-query CCDS DB by Nucleotide ID:NM_007022Re-query CCDS DB by Protein ID:NP_008953Link to BLAST:NP_008953.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278213.1 222 O14569 222 100% 0 0
NP_008953.1 222 O14569 222 100% 0 0

Chromosomal Locations for CCDS 2827.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50351434 50351560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50352009 50352046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50353241 50353744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGCCCTTTCTGCGGAGACCGAGTCACACATCTACCGAGCTCTGCGTACTGCTTCTGGCGCTGCCGCCC
ACCTTGTGGCCCTGGGCTTTACCATCTTTGTGGCTGTGCTTGCCAGGCCTGGCTCCAGCCTGTTCTCCTG
GCACCCGGTGCTTATGTCTTTGGCTTTCTCCTTCCTGATGACCGAGGCACTACTGGTGTTTTCTCCTGAG
AGTTCGCTGCTGCACTCCCTCTCACGGAAAGGCCGAGCACGCTGCCACTGGGTGCTGCAGCTGCTGGCCC
TGCTGTGTGCACTGCTGGGCCTCGGCCTTGTCATCCTCCACAAAGAGCAGCTTGGCAAAGCCCACCTGGT
TACGCGGCATGGGCAGGCAGGGCTGCTGGCTGTGCTGTGGGCAGGGCTGCAGTGCTCAGGTGGGGTGGGG
CTGCTCTACCCCAAGCTGCTGCCCCGATGGCCCCTGGCGAAGCTCAAGCTATACCATGCTACTTCTGGGC
TGGTGGGCTACCTGCTGGGTAGTGCCAGCCTCTTGCTGGGCATGTGCTCACTCTGGTTCACTGCCTCTGT
CACTGGTGCAGCCTGGTACCTGGCTGTATTATGCCCTGTCCTCACCAGCTTGGTCATTATGAACCAGGTG
AGCAATGCCTACCTATACCGCAAGAGGATCCAACCATGA

Translation (222 aa):
MALSAETESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVFSPE
SSLLHSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVG
LLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMCSLWFTASVTGAAWYLAVLCPVLTSLVIMNQV
SNAYLYRKRIQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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