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Report for CCDS33500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33500.1 Public Homo sapiens 20 TAF4 24 110 108 CCDS HistoryNCBI Gene:6874Re-query CCDS DB by CCDS ID:33500.1Re-query CCDS DB by GeneID:6874See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252996.9 ENSP00000252996.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252996.9Link to Ensembl Protein Viewer:ENSP00000252996.3Re-query CCDS DB by Nucleotide ID:ENST00000252996Re-query CCDS DB by Protein ID:ENSP00000252996
Original member Current member NCBI NM_003185.4 NP_003176.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003185.4Link to Protein Sequence:NP_003176.2Re-query CCDS DB by Nucleotide ID:NM_003185Re-query CCDS DB by Protein ID:NP_003176Link to BLAST:NP_003176.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003176.2 1085 O00268 1085 100% 0 0

Chromosomal Locations for CCDS 33500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 61976168 61976335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 61997550 61997669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 61998136 61998192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 61998983 61999108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62000124 62000254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62000552 62000721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62003160 62003274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62003731 62003878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62006510 62006758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62007547 62007636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62009052 62009174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62010046 62010165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62012815 62012934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62014547 62014707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 62064451 62065810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3258 nt):
ATGGCGGCGGGCTCGGATCTGCTGGACGAGGTCTTCTTCAACAGCGAGGTGGACGAGAAAGTGGTGAGCG
ACCTGGTGGGCTCGCTGGAGTCGCAGCTGGCGGCCAGCGCGGCCCACCACCACCACCTCGCGCCGCGCAC
GCCCGAGGTGCGGGCCGCGGCCGCCGGCGCGCTCGGGAACCATGTTGTGAGCGGCAGCCCGGCCGGAGCC
GCGGGCGCAGGGCCGGCCGCCCCCGCCGAGGGCGCGCCCGGAGCGGCGCCGGAGCCGCCCCCCGCAGGTA
GAGCGCGGCCGGGGGGCGGGGGGCCGCAGCGCCCGGGCCCCCCCTCACCGCGCCGCCCCCTTGTCCCCGC
AGGGCCCGCGCCGCCCGCCGCGAAGCTGAGGCCGCCGCCCGAGGGCAGCGCGGGGTCCTGCGCCCCGGTG
CCCGCCGCCGCCGCCGTCGCCGCGGGGCCCGAGCCCGCCCCCGCCGGCCCCGCCAAGCCCGCCGGCCCCG
CCGCGCTGGCCGCCCGCGCCGGCCCCGGCCCCGGGCCCGGCCCCGGCCCCGGCCCCGGCCCTGGCCCTGG
CAAGCCCGCCGGCCCCGGCGCCGCGCAAACTTTGAATGGGAGCGCCGCGCTGCTGAACTCGCACCACGCC
GCCGCACCTGCTGTCAGCCTGGTCAACAACGGGCCCGCCGCGCTGCTGCCGCTGCCCAAGCCCGCCGCCC
CCGGCACTGTCATCCAGACGCCCCCCTTCGTGGGCGCCGCCGCGCCCCCCGCGCCCGCCGCGCCCTCGCC
CCCCGCCGCCCCCGCGCCCGCCGCCCCCGCCGCCGCCCCGCCCCCGCCACCCCCCGCGCCCGCCACTCTG
GCCCGGCCGCCCGGCCACCCCGCCGGACCCCCGACCGCCGCGCCCGCCGTGCCGCCCCCCGCCGCCGCCC
AGAACGGGGGCAGCGCCGGGGCAGCCCCCGCCCCCGCCCCGGCCGCCGGGGGCCCCGCGGGGGTCAGCGG
CCAACCCGGGCCCGGCGCGGCGGCTGCGGCGCCGGCGCCGGGGGTCAAGGCCGAGTCGCCCAAGAGGGTG
GTGCAGGCGGCGCCCCCGGCGGCGCAGACCCTGGCGGCCAGCGGCCCGGCCAGCACGGCGGCCAGCATGG
TCATCGGGCCAACTATGCAAGGGGCGCTGCCCAGCCCGGCCGCCGTCCCGCCGCCCGCCCCCGGGACCCC
CACCGGGCTGCCCAAAGGCGCGGCCGGCGCAGTGACCCAGAGCCTGTCCCGGACGCCCACGGCCACCACC
AGCGGGATTCGGGCCACCCTGACGCCCACCGTGCTGGCCCCCCGCTTGCCGCAGCCGCCTCAGAACCCGA
CCAACATCCAGAACTTCCAGCTGCCCCCAGGAATGGTCCTCGTCCGAAGTGAGAATGGGCAGTTGTTAAT
GATTCCTCAGCAGGCCTTGGCCCAGATGCAGGCGCAGGCCCATGCCCAGCCTCAGACCACCATGGCGCCT
CGCCCTGCCACCCCCACAAGTGCCCCTCCCGTCCAGATCTCCACCGTACAGGCACCTGGAACACCTATCA
TTGCACGGCAGGTGACCCCAACTACCATAATTAAGCAAGTGTCTCAGGCCCAGACAACGGTGCAGCCCAG
TGCAACCCTGCAGCGCTCGCCCGGCGTCCAGCCTCAGCTCGTTCTGGGTGGCGCTGCCCAGACGGCTTCA
CTTGGGACGGCGACGGCTGTTCAGACGGGGACTCCTCAGCGCACGGTACCAGGGGCGACCACCACTTCCT
CAGCTGCCACGGAAACTATGGAAAACGTGAAGAAATGTAAAAATTTCCTATCTACGTTAATAAAACTGGC
TTCATCTGGCAAGCAGTCTACAGAGACAGCAGCTAATGTGAAAGAGCTCGTGCAGAATTTACTGGATGGA
AAAATAGAAGCAGAAGATTTCACAAGCAGGTTATACCGAGAACTTAATTCTTCACCTCAACCTTACCTTG
TGCCTTTCCTGAAGAGGAGCTTACCCGCCTTGAGACAGCTGACCCCCGACTCCGCGGCCTTCATCCAGCA
GAGCCAGCAGCAGCCGCCACCGCCCACCTCGCAGGCCACCACTGCGCTCACGGCCGTGGTGCTGAGTAGC
TCGGTCCAGCGCACGGCCGGGAAGACGGCGGCCACCGTGACCAGTGCCCTCCAGCCCCCTGTGCTCAGCC
TCACGCAGCCCACGCAGGTCGGCGTCGGCAAGCAGGGGCAACCCACACCGCTGGTCATCCAGCAGCCTCC
GAAGCCAGGAGCCCTGATCCGGCCCCCGCAGGTGACGTTGACGCAGACACCCATGGTCGCCCTGCGGCAG
CCTCACAACCGGATCATGCTCACCACGCCTCAGCAGATCCAGCTGAACCCACTGCAGCCAGTCCCTGTGG
TGAAACCCGCCGTGTTACCTGGAACCAAAGCCCTTTCTGCTGTCTCGGCACAAGCAGCTGCTGCACAGAA
AAATAAACTCAAGGAGCCTGGGGGAGGTTCGTTTCGGGACGATGATGACATTAATGATGTTGCATCGATG
GCTGGAGTAAACTTGTCAGAAGAAAGTGCAAGAATATTAGCCACGAACTCTGAATTGGTGGGCACGCTAA
CGCGGTCCTGTAAAGATGAAACCTTCCTCCTCCAAGCGCCTTTGCAGAGAAGAATATTAGAAATAGGTAA
AAAACATGGTATAACGGAATTACATCCAGATGTAGTAAGTTATGTATCACATGCCACGCAACAAAGGCTA
CAGAATCTTGTAGAGAAAATATCAGAAACAGCTCAGCAGAAGAACTTTTCTTACAAGGATGACGACAGAT
ATGAGCAGGCGAGTGACGTCCGGGCACAGCTCAAGTTTTTTGAACAGCTTGATCAAATCGAAAAGCAGAG
GAAGGATGAGCAGGAGCGGGAGATCCTGATGAGGGCAGCAAAGTCTCGGTCAAGACAAGAAGATCCAGAA
CAGTTAAGGCTGAAACAGAAGGCAAAGGAGATGCAGCAACAGGAACTGGCACAAATGAGACAGCGGGACG
CCAACCTCACAGCACTAGCAGCGATCGGGCCCAGGAAAAAGAGGAAAGTGGACTGTCCGGGGCCGGGCTC
AGGAGCAGAGGGGTCGGGCCCCGGCTCAGTGGTCCCAGGCAGCTCGGGTGTCGGAACCCCCAGACAGTTC
ACGCGACAAAGAATCACGCGGGTCAACCTCAGGGACCTCATATTTTGTTTAGAAAATGAACGTGAGACAA
GCCATTCACTGCTGCTCTACAAAGCATTCCTTAAGTGA

Translation (1085 aa):
MAAGSDLLDEVFFNSEVDEKVVSDLVGSLESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGA
AGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPV
PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHA
AAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATL
ARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRV
VQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATT
SGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAP
RPATPTSAPPVQISTVQAPGTPIIARQVTPTTIIKQVSQAQTTVQPSATLQRSPGVQPQLVLGGAAQTAS
LGTATAVQTGTPQRTVPGATTTSSAATETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQNLLDG
KIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSAAFIQQSQQQPPPPTSQATTALTAVVLSS
SVQRTAGKTAATVTSALQPPVLSLTQPTQVGVGKQGQPTPLVIQQPPKPGALIRPPQVTLTQTPMVALRQ
PHNRIMLTTPQQIQLNPLQPVPVVKPAVLPGTKALSAVSAQAAAAQKNKLKEPGGGSFRDDDDINDVASM
AGVNLSEESARILATNSELVGTLTRSCKDETFLLQAPLQRRILEIGKKHGITELHPDVVSYVSHATQQRL
QNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPE
QLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDCPGPGSGAEGSGPGSVVPGSSGVGTPRQF
TRQRITRVNLRDLIFCLENERETSHSLLLYKAFLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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