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Report for CCDS15883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15883.1 Public Mus musculus 2 Ptpa 23 108 98 CCDS HistoryNCBI Gene:110854Re-query CCDS DB by CCDS ID:15883.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042055.9 ENSMUSP00000046837.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042055.9Link to Ensembl Protein Viewer:ENSMUSP00000046837.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042055Re-query CCDS DB by Protein ID:ENSMUSP00000046837
Original member Current member NCBI NM_138748.5 NP_620087.3 Accepted alive Link to Nucleotide Sequence:NM_138748.5Link to Protein Sequence:NP_620087.3Re-query CCDS DB by Nucleotide ID:NM_138748Re-query CCDS DB by Protein ID:NP_620087Link to BLAST:NP_620087.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620087.3 323 P58389 323 100% 0 0

Chromosomal Locations for CCDS 15883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30416302 30416332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30426399 30426496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30428316 30428402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30431961 30432086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30435564 30435681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30437570 30437669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30438229 30438353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30439664 30439764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30443290 30443397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30446377 30446454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCCGAGGGCGAGCGGCAGCCGCCGCCAGATTCTTCAGAAGAGACCCCTCCAACTACTCAGAACTTTA
TC
ATTCCAAAAAAGGAGATCCACACAGTTCCAGATATGGGCAAATGGAAGCGCTCTCAGGCATATGCTGA
C
TACATTGGCTTCATCCTTACCCTCAATGAAGGTGTGAAGGGGAAGAAGCTGACCTTCGACTACAAAGTC
TCT
GAGGCCATCGAGAAGCTGGTGGCACTTCTTGATACGCTGGATAGGTGGATTGATGAAACCCCGCCAG
TG
GACCAGCCTTCCCGGTTTGGGAACAAAGCCTACAGAACCTGGTATGCCAAACTTGATCAGGAAGCAGA
A
AACTTGGTGGCCACAGTGGTCCCCACCCACCTGGCTGCTGCTGTGCCTGAAGTGGCAGTTTACCTGAAG
GAG
GCTGTGGGGAACTCCACACGAATTGACTATGGCACAGGGCATGAGGCTGCCTTTGCTGCTTTCCTCT
GT
TGTCTCTGCAAGATTGGTGTACTCCGGGTGGACGACCAGGTGGCTATTGTCTTCAAGGTGTTTGATAG
G
TATCTTGAGGTTATGCGGAAGTTGCAGAAGACATACAGGATGGAGCCTGCAGGCAGCCAGGGCGTATGG
GGT
CTGGATGACTTCCAGTTCCTGCCCTTCATCTGGGGCAGCTCACAGCTCATAGACCACCCCCACCTGG
AG
CCCAGACATTTCGTGGATGAGAAGGCGGTGAGCGAGAACCACAAGGACTACATGTTTCTCCAGTGCAT
C
CTGTTCATCACTGAGATGAAGACTGGCCCCTTTGCGGAACACTCCAACCAGCTGTGGAACATCAGTGCT
GTC
CCCTCCTGGTCTAAAGTGAACCAGGGCCTCATTCGAATGTATAAGGCAGAGTGCCTGGAGAAGTTCC
CT
GTGATCCAGCACTTCAAGTTCGGGAGCCTGCTGCCCATCCATCCCGTCACATCAGGCTAG


Translation (323 aa):
MAEGERQPPPDSSEETPPTTQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFDYKV
S
E
AIEKLVALLDTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDQEAENLVATVVPTHLAAAVPEVAVYLK
E
AVGNSTRIDYGT
GHEAAFAAFLCCLCKIGVLRVDDQVAIVFKVFDRYLEVMRKLQKTYRMEPAGSQGVW
G
LDDFQFLPFIWGSSQLI
DHPHLEPRHFVDEKAVSENHKDYMFLQCILFITEMKTGPFAEHSNQLWNISA
V
PSWSKVNQGLIRMYKAE
CLEKFPVIQHFKFGSLLPIHPVTSG



Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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