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Report for CCDS8047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8047.1 Public Homo sapiens 11 PLAAT3 24 110 108 CCDS HistoryNCBI Gene:11145Re-query CCDS DB by CCDS ID:8047.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8047.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323646.9 ENSP00000320337.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323646.9Link to Ensembl Protein Viewer:ENSP00000320337.5Re-query CCDS DB by Nucleotide ID:ENST00000323646Re-query CCDS DB by Protein ID:ENSP00000320337
Original member Current member EBI ENST00000415826.3 ENSP00000389124.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000415826.3Link to Ensembl Protein Viewer:ENSP00000389124.1Re-query CCDS DB by Nucleotide ID:ENST00000415826Re-query CCDS DB by Protein ID:ENSP00000389124
Original member Current member NCBI NM_001128203.2 NP_001121675.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128203.2Link to Protein Sequence:NP_001121675.1Re-query CCDS DB by Nucleotide ID:NM_001128203Re-query CCDS DB by Protein ID:NP_001121675Link to BLAST:NP_001121675.1
Original member Current member NCBI NM_007069.3 NP_009000.2 Accepted alive Link to Nucleotide Sequence:NM_007069.3Link to Protein Sequence:NP_009000.2Re-query CCDS DB by Nucleotide ID:NM_007069Re-query CCDS DB by Protein ID:NP_009000Link to BLAST:NP_009000.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121675.1 162 P53816 162 100% 0 0
NP_009000.2 162 P53816 162 100% 0 0

Chromosomal Locations for CCDS 8047.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63574945 63575046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63590100 63590368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63598061 63598163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63614000 63614014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGCGTGCGCCCATTCCAGAGCCTAAGCCTGGAGACCTGATTGAGATTTTTCGCCCTTTCTACAGACACT
GGGCCATCTATGTTGGCGATGGATATGTGGTTCATCTGGCCCCTCCAAGTGAGGTCGCAGGAGCTGGTGC
AGCCAGTGTCATGTCCGCCCTGACTGACAAGGCCATCGTGAAGAAGGAATTGCTGTATGATGTGGCCGGG
AGTGACAAGTACCAGGTCAACAACAAACATGATGACAAGTACTCGCCGCTGCCCTGCAGCAAAATCATCC
AGCGGGCGGAGGAGCTGGTGGGGCAGGAGGTGCTCTACAAGCTGACCAGTGAGAACTGCGAGCACTTTGT
GAATGAGCTGCGCTATGGAGTCGCCCGCAGTGACCAGGTCAGAGATGTCATCATCGCTGCAAGCGTTGCA
GGAATGGGCTTGGCAGCCATGAGCCTTATTGGAGTCATGTTCTCAAGAAACAAGCGACAAAAGCAATAA

Translation (162 aa):
MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYDVAG
SDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNELRYGVARSDQVRDVIIAASVA
GMGLAAMSLIGVMFSRNKRQKQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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