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Report for CCDS52706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52706.1 Public Mus musculus 8 Egln1 23 108 98 CCDS HistoryNCBI Gene:112405Re-query CCDS DB by CCDS ID:52706.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52706.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034469.6 ENSMUSP00000034469.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034469.6Link to Ensembl Protein Viewer:ENSMUSP00000034469.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034469Re-query CCDS DB by Protein ID:ENSMUSP00000034469
Original member NCBI NM_053207.2 NP_444437.2 Updated not alive Link to Nucleotide Sequence:NM_053207.2Link to Protein Sequence:NP_444437.2Re-query CCDS DB by Nucleotide ID:NM_053207Re-query CCDS DB by Protein ID:NP_444437
Current member NCBI NM_053207.3 NP_444437.2 Accepted alive Link to Nucleotide Sequence:NM_053207.3Link to Protein Sequence:NP_444437.2Re-query CCDS DB by Nucleotide ID:NM_053207Re-query CCDS DB by Protein ID:NP_444437Link to BLAST:NP_444437.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444437.2 400 Q91YE3 400 100% 0 0

Chromosomal Locations for CCDS 52706.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 124910708 124910763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124911741 124911808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124914017 124914153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124915661 124915780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124948233 124949054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGGCCAGTGACAGCGGCGGGCCCGGCGTGCTGAGCGCCAGCGAGCGCGACCGGCAGTACTGCGAGCTGT
GCGGGAAGATGGAGAACCTGCTGCGCTGCGGCCGCTGCCGCAGCTCCTTCTACTGCTGCAAAGAGCACCA
GCGCCAGGACTGGAAGAAGCACAAGCTGGTGTGCCAGGGCGGCGAGGCCCCCCGCGCGCAGCCCGCGCCG
GCGCAGCCCCGCGTCGCGCCCCCGCCCGGTGGGGCCCCCGGAGCCGCGCGCGCCGGCGGGGCGGCCCGGC
GCGGGGACAGCGCGGCGGCCTCGCGCGTACCGGGCCCGGAGGACGCGGCGCAGGCCCGGAGCGGCCCCGG
CCCAGCAGAGCCCGGCTCCGAGGATCCTCCGCTTAGCCGGTCTCCGGGCCCCGAGCGCGCCAGCCTGTGC
CCAGCGGGTGGCGGCCCCGGGGAGGCGCTGAGTCCCGGTGGAGGGCTGCGGCCCAACGGGCAGACCAAGC
CGTTGCCCGCGTTGAAGCTGGCTCTGGAGTACATCGTGCCGTGCATGAACAAGCACGGCATCTGCGTGGT
GGACGACTTCCTGGGCAGGGAGACCGGGCAGCAGATCGGCGATGAGGTGCGCGCCCTGCACGACACCGGC
AAGTTCACGGACGGGCAGCTGGTCAGCCAGAAGAGTGACTCTTCCAAGGACATCCGGGGGGACCAGATCA
CCTGGATCGAGGGCAAAGAGCCCGGCTGCGAAACCATCGGCCTGCTCATGAGCAGCATGGACGACCTGAT
CCGCCACTGCAGCGGGAAGCTGGGCAACTACAGGATAAACGGCCGAACGAAAGCCATGGTTGCTTGTTAC
CCAGGCAACGGAACAGGCTATGTCCGTCACGTTGATAACCCAAATGGAGATGGAAGATGCGTGACATGTA
TATATTATCTAAATAAAGACTGGGACGCCAAGGTAAGTGGAGGTATTCTTCGAATTTTTCCAGAAGGCAA
AGCCCAGTTTGCTGACATTGAACCCAAATTTGATAGACTGCTGTTTTTCTGGTCTGACCGGCGTAACCCT
CATGAAGTACAGCCAGCATACGCCACAAGGTACGCAATAACTGTTTGGTATTTTGATGCAGATGAGCGAG
CGAGAGCTAAAGTAAAATATCTAACAGGTGAGAAAGGTGTGAGGGTTGAACTCAAGCCCAATTCAGTCAG
CAAAGACGTCTAG

Translation (400 aa):
MASDSGGPGVLSASERDRQYCELCGKMENLLRCGRCRSSFYCCKEHQRQDWKKHKLVCQGGEAPRAQPAP
AQPRVAPPPGGAPGAARAGGAARRGDSAAASRVPGPEDAAQARSGPGPAEPGSEDPPLSRSPGPERASLC
PAGGGPGEALSPGGGLRPNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGRETGQQIGDEVRALHDTG
KFTDGQLVSQKSDSSKDIRGDQITWIEGKEPGCETIGLLMSSMDDLIRHCSGKLGNYRINGRTKAMVACY
PGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRNP
HEVQPAYATRYAITVWYFDADERARAKVKYLTGEKGVRVELKPNSVSKDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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