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Report for CCDS17581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17581.1 Public Mus musculus 3 Rptn 23 108 98 CCDS HistoryNCBI Gene:20129Re-query CCDS DB by CCDS ID:17581.1Re-query CCDS DB by GeneID:20129See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045912.2 ENSMUSP00000044998.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045912.2Link to Ensembl Protein Viewer:ENSMUSP00000044998.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000045912Re-query CCDS DB by Protein ID:ENSMUSP00000044998
Original member Current member NCBI NM_009100.2 NP_033126.2 Accepted alive Link to Nucleotide Sequence:NM_009100.2Link to Protein Sequence:NP_033126.2Re-query CCDS DB by Nucleotide ID:NM_009100Re-query CCDS DB by Protein ID:NP_033126Link to BLAST:NP_033126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033126.2 1118 P97347 1118 100% 0 0

Chromosomal Locations for CCDS 17581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 93394979 93395116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 93395500 93398718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3357 nt):
ATGCCTCAACTTCTTAATAGCATTCTCAACGTAAGCAAGGTTTTCCAGGACTATGCTGAATATCATGGGG
TAGGCGCTTCACTGAGCAAGAAGGAGTTGAAGCAGCTGCTGCTCACTGAGTTTGGAGACATCCTTCGGAG
ACCAAATGATCCAGAAACTGTGGAAACCATTCTGGAACACTTGGACCGAGACAGAAATGGATATGTTGAT
TTTCATGAATACCTCTTGCTGGTATTCCAATTGGTCCAAGCCTGCCATCATAAGCTAGATAGTAAGTTCT
ATGGATCTAGAACCTCCTCCCAGAAAGAACATGATCAGGAAGGAACACGGAGCCATAAATTTTCAGAAAG
CACAGGCAGACAACATAGGCAGAGGTATGAAGGAGAACGCCGGAACTCTCACCACAATCAGTCTGAAGGA
CAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGATAAGGACTCTGAGAGACATGATACAGATC
CTCACTGTGGTCAGTCAGAGACATTCCATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGA
TTATAGCTCAGATCAGTCTGAGTCAGACAATGAATCTTCTAGTTCTAGTCAAAGACTGGGTTATAAATCT
AGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTT
TTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTCATGGTCAGTCTGGAAGATTCCGAAAAGA
TTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTATGAACAATATGGAAGTCAGCATCAGAAA
TCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATA
GTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCA
GAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGAC
CAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAG
ACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACA
AGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGA
CAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCA
GGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGG
CAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACA
GACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGA
CAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCA
GACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCAT
CGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATG
GTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTT
TGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACAT
TGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTC
ACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCC
TCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGT
CCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGA
GTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCA
GAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGAT
CAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAG
GCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCA
AGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGA
CAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGATTGGAAAAACTGAAAATCAAGGGCAAAACAGGCACT
CTCTAGGGACTGATAGAACAAGAAGAGACTCATATGTTGAACAATCTGGAAGGTCAGTAAAACTAAGTCA
GCAGAATTCAAGAGAAGAAGTGCGTCAAACCCAGAGTCAGAGATCCCATGATAGAAGGGAGCAGCAAATC
CAGCAGCAGACATGGAAGCCTAAAGAGGACAACCAACACAAACTCTTAGCTCAGGTACAGCAAGAGCCAT
ACTCCTATGAAGAATATGATTGGCAATCACAGAGCAGTGAGCAGGACCACTGCGGGGAGGAAGAATATCA
AGACTGGGATAGACACAGTGTTGAGGATCAGGAAAATCTGTATGAGATGCAGAACTGGCAAACTCATGAA
GAGGAACAAAGCCATCAAACAAGTGATAGGCAAACCCATGTAGACGAGCAGAACCAGCAGAGACAACACA
GGCAAACTCATGAAGAAAATCACGATCATCAACATGGTAGACATCATGAAGATGAGCACAATCACAGGAG
ACAAGACCATCATCAACAAAGGGAGAGACAAACCCATGAAGAAAAGGAGAAGTATCAAGGAGGCCAAGAC
CAATCCAGAAGCTTCCCCAACAGAGAAAAATCCCACATGAGTGAAGATGACCAGTGTGAAGGGCCCCAGG
GAAGACGTTTCCATCCAACTCATGGTGGTGGAAAGTCCCAAAGAAGAGAAAAATCTGGAAACCACCCTAC
CAAACCAGCCAACTATTCCAGCCCTTTGTACGACTATGTCCAAGAACAGGCAGCCTATCAGTACTAG

Translation (1118 aa):
MPQLLNSILNVSKVFQDYAEYHGVGASLSKKELKQLLLTEFGDILRRPNDPETVETILEHLDRDRNGYVD
FHEYLLLVFQLVQACHHKLDSKFYGSRTSSQKEHDQEGTRSHKFSESTGRQHRQRYEGERRNSHHNQSEG
QHQNVQHDQSQRQDKDSERHDTDPHCGQSETFHGDSHYGHSERQDTDYSSDQSESDNESSSSSQRLGYKS
SHEQPKGQGYVFALSQSKNPEQAFHYGQSKTSGQQSSHGQSGRFRKDSYSSQTSQQESDSYEQYGSQHQK
SGNSQTERQGQNSQYGQTNKKGHSSYHEQTEGQGQSFHYGQKGRKDQSFQQGQKGRKDQSPHLGQKGRQD
QSPHRGQKGRQDQSPHQGQKGRQDQSPHRGQKGRQDQSPHQGQKGRQDQSPHLGQKGRQDQSPHQGQKGR
QDQSPHQGQKGRQDQSSHQGQKGRQDQSSHQGQKGRQDQSSHQGQKGRQDQSSHQGQREGQDQNSQWHRT
DSQGQSFHYGQTGGHSLSSHQGQTDSQGQNSNWHRTDSQGQSFHYGQTGGQGLSSHQGQTDSQGQNSNWH
RTDSQGQSFHFDQAGREVQGSHHGQTDRQSQNSNWHRTDSQGQSFHFDQAGKEVQGSHQGQTDSQGQSSH
WHQTDRQGQSSQQGHKDRQGQNTHQGQKGRQDLSPHQGQKGRQDQSPHLGQKGRHDQSPHQGQKGRHDQS
PHQGQKGRQDLSSHQGQKGRQDQSPHLGQKGRHDQSPHRGQKGRQDQSPHQGQKGRQDQSSHQGQREGQD
QNSHWHRTDRQGQSFHYGQTGGQGLSSHQGQTDSQGQNSQWHRTDSQGQSFHFDQAGREGQSSHHGQTDR
QSQSSHCGQSEIGKTENQGQNRHSLGTDRTRRDSYVEQSGRSVKLSQQNSREEVRQTQSQRSHDRREQQI
QQQTWKPKEDNQHKLLAQVQQEPYSYEEYDWQSQSSEQDHCGEEEYQDWDRHSVEDQENLYEMQNWQTHE
EEQSHQTSDRQTHVDEQNQQRQHRQTHEENHDHQHGRHHEDEHNHRRQDHHQQRERQTHEEKEKYQGGQD
QSRSFPNREKSHMSEDDQCEGPQGRRFHPTHGGGKSQRREKSGNHPTKPANYSSPLYDYVQEQAAYQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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