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Report for CCDS9449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9449.1 Public Homo sapiens 13 KLF12 24 110 108 CCDS HistoryNCBI Gene:11278Re-query CCDS DB by CCDS ID:9449.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9449.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377669.7 ENSP00000366897.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377669.7Link to Ensembl Protein Viewer:ENSP00000366897.2Re-query CCDS DB by Nucleotide ID:ENST00000377669Re-query CCDS DB by Protein ID:ENSP00000366897
Original member Current member EBI ENST00000703967.1 ENSP00000515592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703967.1Link to Ensembl Protein Viewer:ENSP00000515592.1Re-query CCDS DB by Nucleotide ID:ENST00000703967Re-query CCDS DB by Protein ID:ENSP00000515592
Original member Current member NCBI NM_001400136.1 NP_001387065.1 Accepted alive Link to Nucleotide Sequence:NM_001400136.1Link to Protein Sequence:NP_001387065.1Re-query CCDS DB by Nucleotide ID:NM_001400136Re-query CCDS DB by Protein ID:NP_001387065Link to BLAST:NP_001387065.1
Original member Current member NCBI NM_001400139.1 NP_001387068.1 Accepted alive Link to Nucleotide Sequence:NM_001400139.1Link to Protein Sequence:NP_001387068.1Re-query CCDS DB by Nucleotide ID:NM_001400139Re-query CCDS DB by Protein ID:NP_001387068Link to BLAST:NP_001387068.1
Original member Current member NCBI NM_001400141.1 NP_001387070.1 Accepted alive Link to Nucleotide Sequence:NM_001400141.1Link to Protein Sequence:NP_001387070.1Re-query CCDS DB by Nucleotide ID:NM_001400141Re-query CCDS DB by Protein ID:NP_001387070Link to BLAST:NP_001387070.1
Original member Current member NCBI NM_007249.5 NP_009180.3 Accepted alive Link to Nucleotide Sequence:NM_007249.5Link to Protein Sequence:NP_009180.3Re-query CCDS DB by Nucleotide ID:NM_007249Re-query CCDS DB by Protein ID:NP_009180Link to BLAST:NP_009180.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001387065.1 402 Q9Y4X4-1 402 100% 0 0
NP_001387068.1 402 Q9Y4X4-1 402 100% 0 0
NP_001387070.1 402 Q9Y4X4-1 402 100% 0 0
NP_009180.3 402 Q9Y4X4-1 402 100% 0 0

Chromosomal Locations for CCDS 9449.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73695490 73695671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73715368 73715525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73764938 73765000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73813152 73813287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73845827 73846373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73943981 73944070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73994990 73995022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGAATATCCATATGAAGAGAAAAACAATAAAGAATATCAACACCTTTGAGAACAGAATGTTAATGCTTG
ATGGGATGCCGGCAGTCAGAGTCAAAACAGAGCTTTTGGAATCTGAACAAGGGTCTCCAAACGTCCACAA
CTATCCCGATATGGAAGCCGTTCCCCTGTTGCTAAATAATGTGAAAGGGGAGCCCCCGGAGGACTCGTTA
TCTGTAGATCACTTCCAAACACAAACTGAGCCAGTGGACTTGTCAATAAACAAAGCCAGGACGTCCCCTA
CTGCCGTTTCATCCTCCCCAGTTTCCATGACAGCATCTGCCTCCTCACCTTCTTCAACTTCAACCTCTTC
ATCGTCTTCTAGTCGTCTAGCCTCATCCCCAACTGTTATCACATCAGTATCTTCAGCGTCATCTTCGTCA
ACAGTATTAACTCCAGGGCCCCTTGTGGCCTCTGCATCTGGTGTTGGAGGCCAGCAGTTTTTGCACATTA
TCCATCCCGTACCGCCTTCAAGTCCCATGAATTTACAGTCTAACAAACTGAGTCATGTTCACCGCATCCC
CGTGGTGGTACAGTCGGTGCCTGTTGTCTACACAGCTGTAAGGTCACCTGGAAATGTGAACAACACTATT
GTCGTGCCGCTTTTGGAGGATGGGAGAGGCCATGGCAAAGCACAAATGGACCCCCGAGGCCTATCTCCCA
GACAAAGTAAAAGTGACAGTGATGATGATGACCTGCCAAATGTGACCTTAGATAGCGTTAATGAAACTGG
ATCTACGGCCCTTTCCATAGCCAGAGCAGTACAAGAGGTACATCCGTCCCCAGTATCAAGGGTCCGGGGC
AATCGAATGAATAATCAAAAGTTTCCTTGTTCAATTTCACCATTTAGTATTGAGAGCACAAGACGCCAGA
GACGGTCTGAATCCCCAGACTCCAGAAAACGGCGTATCCACAGATGTGATTTTGAGGGATGCAACAAAGT
GTACACAAAAAGTTCTCACCTGAAGGCTCACCGGAGGACACATACAGGAGAGAAACCTTACAAGTGTACC
TGGGAAGGCTGCACCTGGAAGTTCGCTCGTTCAGATGAACTGACGAGGCATTACCGCAAACATACGGGAG
TGAAGCCATTCAAGTGCGCGGACTGTGATCGCAGCTTTTCCCGGTCAGATCATTTGGCCCTGCACCGCCG
GAGGCATATGTTGGTGTGA

Translation (402 aa):
MNIHMKRKTIKNINTFENRMLMLDGMPAVRVKTELLESEQGSPNVHNYPDMEAVPLLLNNVKGEPPEDSL
SVDHFQTQTEPVDLSINKARTSPTAVSSSPVSMTASASSPSSTSTSSSSSSRLASSPTVITSVSSASSSS
TVLTPGPLVASASGVGGQQFLHIIHPVPPSSPMNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPGNVNNTI
VVPLLEDGRGHGKAQMDPRGLSPRQSKSDSDDDDLPNVTLDSVNETGSTALSIARAVQEVHPSPVSRVRG
NRMNNQKFPCSISPFSIESTRRQRRSESPDSRKRRIHRCDFEGCNKVYTKSSHLKAHRRTHTGEKPYKCT
WEGCTWKFARSDELTRHYRKHTGVKPFKCADCDRSFSRSDHLALHRRRHMLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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