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Report for CCDS44780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44780.1 Public Homo sapiens 11 GLB1L3 24 110 108 CCDS HistoryNCBI Gene:112937Re-query CCDS DB by CCDS ID:44780.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44780.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431683.7 ENSP00000396615.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000431683.7Link to Ensembl Protein Viewer:ENSP00000396615.2Re-query CCDS DB by Nucleotide ID:ENST00000431683Re-query CCDS DB by Protein ID:ENSP00000396615
Original member Current member NCBI NM_001080407.3 NP_001073876.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080407.3Link to Protein Sequence:NP_001073876.2Re-query CCDS DB by Nucleotide ID:NM_001080407Re-query CCDS DB by Protein ID:NP_001073876Link to BLAST:NP_001073876.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073876.2 653 Q8NCI6-1 653 100% 0 0

Chromosomal Locations for CCDS 44780.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 134276741 134276763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134277326 134277451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134277700 134277912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134281377 134281445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134282025 134282120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134283737 134283845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134288798 134288890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134292132 134292213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134293145 134293209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134307124 134307208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134309626 134309763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134310571 134310651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134311064 134311170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134312349 134312489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134312816 134312887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134313396 134313474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134313941 134314028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134314330 134314441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134318631 134318747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 134318877 134318942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1962 nt):
ATGAAGTCCCCGCCCCTCCTCAGCCCGTGTCTCTCCTGGAAGAGAATGGCGGGCATCTTTTTCCTGCCAT
TTATCTCATCAGGTTTTGCTCCTCGGTTTAAGCAGGAAGAGAACTTCATGCTTGGAAGAGCGCATCCGTC
CCAGCCTAGGTTTAATTGGTCTCATCTGACCCCTCTGGAGCTGAAGAATCGATCTGTGGGACTTGGAACT
GAAAGCACAGGTCGGGGTAAGCCCCACTTCACACTGGAGGGCCACAAGTTCCTGATCTTCGGGGGCTCCA
TCCACTATTTCCGGGTGCCCAGGGAGTACTGGAGGGACCGCCTGCTGAAGCTGAAGGCCTGTGGCTTCAA
TACTGTCACCACCTATGTTCCGTGGAACCTGCATGAGCCAGAAAGAGGCAAATTTGACTTCTCTGGGAAC
CTGGACCTGGAGGCCTTCGTCCTGATGGCCGCAGAGATCGGGCTGTGGGTGATTCTGCGTCCAGGCCGCT
ACATCTGCAGTGAGATGGACCTCGGGGGCTTGCCCAGCTGGCTCCTGCAAGACCCCCGGTTACTGTTGAG
GACAACCAACAAGAGCTTCATTGAAGCAGTTGAGAAGTATTTTGACCACCTGATTCCCAGAGTGATTCCT
CTCCAGTACCGCCAGGCAGGCCCTGTCATCGCGGTGCAAGTGGAGAATGAGTATGGCTCATTCAATAAGG
ATAAAACATACATGCCGTATCTCCACAAGGCCCTGCTGAGAAGAGGGATTGTGGAGCTTCTCTTGACCTC
TGATGGTGAGAAACATGTGCTGAGTGGCCACACCAAAGGAGTGTTGGCCGCCATCAATTTGCAAAAACTT
CACCAGGATACTTTCAATCAGCTTCATAAAGTCCAGAGAGATAAGCCCCTTCTGATTATGGAATACTGGG
TCGGCTGGTTCGACAGATGGGGAGATAAGCACCATGTTAAAGATGCAAAGGAGGTTGAACATGCTGTGTC
TGAATTCATCAAATATGAGATCTCCTTCAATGTATATATGTTCCATGGTGGAACCAACTTTGGTTTCATG
AACGGGGCCACATATTTCGGGAAGCACTCGGGCATTGTCACCAGCTATGACTATGATGCAGTGCTCACGG
AGGCTGGAGATTACACAGAAAAATATCTGAAGCTTCAAAAACTCTTTCAATCTGTCTCAGCAACTCCCCT
GCCCCGAGTACCCAAACTTCCTCCCAAGGCTGTGTATCCCCCCGTGAGACCGTCGCTGTACCTCCCGCTG
TGGGACGCCCTATCCTACTTAAATGAGCCAGTCAGGTCGCGTCAGCCCGTCAACATGGAGAACCTTCCCA
TAAACAATGGGAGCGGCCAGTCCTACGGGCTTGTCCTGTATGAGAAGTCCATCTGCTCCGGAGGCCGCCT
CCGTGCCCACGCTCATGACGTGGCACAGGTGTTTTTGGATGAGACAATGATAGGGATTCTGAATGAGAAT
AATAAGGACCTGCACATTCCTGAACTCAGGGACTGCCGATACCTGAGGATCCTGGTGGAGAATCAAGGAC
GAGTCAATTTTTCATGGCAAATACAGAATGAGCAGAAAGGAATAACTGGATCTGTCAGCATCAATAACTC
TTCCCTGGAGGGCTTTACCATCTATTCCCTGGAGATGAAAATGAGCTTCTTTGAGAGGCTCCGCTCTGCC
ACCTGGAAGCCTGTCCCAGACAGCCACCAGGGCCCGGCCTTCTACTGTGGGACCTTGAAGGCTGGCCCTT
CTCCCAAGGACACCTTCCTGAGCCTGCTGAACTGGAATTATGGATTTGTGTTCATCAATGGACGTAACCT
TGGGCGATATTGGAATATTGGGCCTCAGAAAACACTGTACCTTCCTGGAGTTTGGCTTCATCCAGAAGAC
AATGAGGTCATCTTGTTTGAGAAGATGATGAGTGGCTCAGATATCAAATCTACAGACAAGCCCACGCTGT
AA

Translation (653 aa):
MKSPPLLSPCLSWKRMAGIFFLPFISSGFAPRFKQEENFMLGRAHPSQPRFNWSHLTPLELKNRSVGLGT
ESTGRGKPHFTLEGHKFLIFGGSIHYFRVPREYWRDRLLKLKACGFNTVTTYVPWNLHEPERGKFDFSGN
LDLEAFVLMAAEIGLWVILRPGRYICSEMDLGGLPSWLLQDPRLLLRTTNKSFIEAVEKYFDHLIPRVIP
LQYRQAGPVIAVQVENEYGSFNKDKTYMPYLHKALLRRGIVELLLTSDGEKHVLSGHTKGVLAAINLQKL
HQDTFNQLHKVQRDKPLLIMEYWVGWFDRWGDKHHVKDAKEVEHAVSEFIKYEISFNVYMFHGGTNFGFM
NGATYFGKHSGIVTSYDYDAVLTEAGDYTEKYLKLQKLFQSVSATPLPRVPKLPPKAVYPPVRPSLYLPL
WDALSYLNEPVRSRQPVNMENLPINNGSGQSYGLVLYEKSICSGGRLRAHAHDVAQVFLDETMIGILNEN
NKDLHIPELRDCRYLRILVENQGRVNFSWQIQNEQKGITGSVSINNSSLEGFTIYSLEMKMSFFERLRSA
TWKPVPDSHQGPAFYCGTLKAGPSPKDTFLSLLNWNYGFVFINGRNLGRYWNIGPQKTLYLPGVWLHPED
NEVILFEKMMSGSDIKSTDKPTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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