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Report for CCDS28602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28602.1 Public Mus musculus 17 Abcg1 23 108 98 CCDS HistoryNCBI Gene:11307Re-query CCDS DB by CCDS ID:28602.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024829.7 ENSMUSP00000024829.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024829.7Link to Ensembl Protein Viewer:ENSMUSP00000024829.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024829Re-query CCDS DB by Protein ID:ENSMUSP00000024829
Original member Current member NCBI NM_009593.2 NP_033723.1 Accepted alive Link to Nucleotide Sequence:NM_009593.2Link to Protein Sequence:NP_033723.1Re-query CCDS DB by Nucleotide ID:NM_009593Re-query CCDS DB by Protein ID:NP_033723Link to BLAST:NP_033723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033723.1 666 Q64343 666 100% 0 0

Chromosomal Locations for CCDS 28602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31057815 31057856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31064385 31064628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31092309 31092426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31094646 31094778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31098253 31098303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31104037 31104182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31105517 31105640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31106060 31106174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31108306 31108454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31108615 31108716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31109483 31109651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31110957 31111057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31111221 31111379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31112929 31113047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31114057 31114285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGGCCTGTCTGATGGCCGCTTTCTCGGTCGGCACCGCCATGAATGCCAGCAGCTACTCTGCCGCAATGA
CGGAGCCCAAGTCCGTGTGCGTGTCAGTGGACGAGGTCGTGTCCAGCAACGTGGATGAGGTTGAGACAGA
CCTGCTCAATGGGCACCTGAAGAAGGTGGACAACAACTTCACAGAGGCCCAGCGCTTTTCCTCCCTTCCG
CGGAGGGCGGCCGTGAACATCGAATTCAAGGACCTTTCCTACTCTGTACCCGAGGGGCCCTGGTGGAAGA
AGAAAGGATACAAGACCCTTTTGAAAGGGATCTCTGGGAAATTCAACAGTGGAGAGCTGGTGGCCATCAT
GGGTCCTTCTGGAGCTGGGAAGTCCACACTCATGAATATTCTGGCAGGATACAGGGAGACTGGCATGAAA
GGGGCAGTCCTTATCAATGGAATGCCCCGGGACCTGCGCTGCTTCCGGAAGGTCTCCTGCTACATCATGC
AGGACGACATGCTGCTGCCTCACCTCACTGTTCAGGAGGCCATGATGGTGTCCGCGCATCTGAAGCTGCA
GGAGAAGGATGAAGGCAGACGAGAGATGGTCAAAGAGATCCTGACAGCCCTGGGCTTGCTGCCCTGTGCC
AACACACGCACGGGGAGCCTCTCAGGCGGCCAGCGGAAACGCCTGGCCATTGCCCTGGAGCTGGTCAACA
ACCCGCCTGTCATGTTCTTTGATGAGCCCACCAGTGGCCTGGACAGCGCCTCCTGCTTCCAAGTGGTGTC
TCTGATGAAAGGACTGGCCCAGGGTGGCCGCTCCATCGTCTGTACCATCCACCAGCCCAGTGCCAAGCTC
TTTGAGCTCTTTGACCAGCTTTATGTCCTAAGTCAAGGACAATGCGTATACAGGGGAAAGGTCTCCAATC
TCGTGCCGTATCTGAGGGATCTGGGTCTGAACTGCCCTACCTACCACAACCCAGCAGACTTTGTCATGGA
AGTGGCATCAGGGGAGTACGGGGATCAGAACAGTCGCCTGGTGAGAGCCGTGCGAGAGGGCATGTGTGAC
GCTGACTATAAGAGAGACCTCGGGGGCGACACCGATGTGAACCCGTTTCTTTGGCACCGGCCTGCTGAAG
AGGACTCCGCCTCCATGGAAGGTTGCCATAGCTTCTCGGCCAGCTGCCTCACCCAGTTCTGCATCCTCTT
CAAGAGGACCTTCCTCAGCATCATGCGGGACTCGGTCCTGACACATCTGCGAATCACCTCGCACATTGGG
ATCGGCCTGCTCATTGGCCTGCTGTACCTGGGGATTGGGAACGAAGCCAAGAAGGTCCTGAGCAACTCCG
GCTTCCTGTTCTTCTCCATGCTGTTCCTCATGTTTGCTGCCCTCATGCCCACCGTTCTGACCTTTCCCCT
GGAGATGAGTGTTTTCCTCCGGGAGCACCTGAACTACTGGTACAGCCTGAAGGCCTACTACCTGGCAAAG
ACCATGGCCGATGTCCCCTTTCAGATCATGTTCCCTGTGGCCTACTGCAGTATCGTATACTGGATGACGT
CCCAGCCGTCGGACGCTGTGCGTTTTGTGCTGTTCGCTGCTCTGGGTACCATGACATCGCTGGTGGCCCA
GTCCTTAGGCCTACTGATTGGAGCTGCATCCACATCCCTGCAGGTTGCGACATTTGTGGGTCCCGTGACA
GCCATCCCCGTCCTGCTCTTCTCCGGATTCTTTGTCAGCTTTGACACCATCCCAGCCTACCTGCAGTGGA
TGTCCTACATCTCCTATGTCAGATACGGCTTTGAGGGGGTCATCCTGTCCATCTACGGCTTGGACCGAGA
AGACCTGCACTGCGACATCGCGGAGACATGCCACTTCCAGAAGTCAGAGGCCATCCTGCGGGAGCTGGAC
GTGGAGAATGCGAAGCTGTACCTGGATTTCATCGTCCTGGGCATCTTCTTCATCTCCCTGCGGCTCATCG
CCTATTTCGTCCTCAGATACAAAATCCGGGCTGAGAGGTAA

Translation (666 aa):
MACLMAAFSVGTAMNASSYSAAMTEPKSVCVSVDEVVSSNVDEVETDLLNGHLKKVDNNFTEAQRFSSLP
RRAAVNIEFKDLSYSVPEGPWWKKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMK
GAVLINGMPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEKDEGRREMVKEILTALGLLPCA
NTRTGSLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIVCTIHQPSAKL
FELFDQLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADFVMEVASGEYGDQNSRLVRAVREGMCD
ADYKRDLGGDTDVNPFLWHRPAEEDSASMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIG
IGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMSVFLREHLNYWYSLKAYYLAK
TMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVATFVGPVT
AIPVLLFSGFFVSFDTIPAYLQWMSYISYVRYGFEGVILSIYGLDREDLHCDIAETCHFQKSEAILRELD
VENAKLYLDFIVLGIFFISLRLIAYFVLRYKIRAER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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