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Report for CCDS19790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19790.1 Public Mus musculus 5 Zscan21 23 108 98 CCDS HistoryNCBI Gene:22697Re-query CCDS DB by CCDS ID:19790.1Re-query CCDS DB by GeneID:22697See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19790.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062350.14 ENSMUSP00000053430.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062350.14Link to Ensembl Protein Viewer:ENSMUSP00000053430.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000062350Re-query CCDS DB by Protein ID:ENSMUSP00000053430
Original member Current member EBI ENSMUST00000080732.9 ENSMUSP00000079557.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080732.9Link to Ensembl Protein Viewer:ENSMUSP00000079557.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000080732Re-query CCDS DB by Protein ID:ENSMUSP00000079557
Original member Current member EBI ENSMUST00000110959.1 ENSMUSP00000106584.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110959.1Link to Ensembl Protein Viewer:ENSMUSP00000106584.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110959Re-query CCDS DB by Protein ID:ENSMUSP00000106584
Original member Current member EBI ENSMUST00000110960.8 ENSMUSP00000106585.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110960.8Link to Ensembl Protein Viewer:ENSMUSP00000106585.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110960Re-query CCDS DB by Protein ID:ENSMUSP00000106585
Original member Current member EBI ENSMUST00000110961.8 ENSMUSP00000106586.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110961.8Link to Ensembl Protein Viewer:ENSMUSP00000106586.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110961Re-query CCDS DB by Protein ID:ENSMUSP00000106586
Original member Current member NCBI NM_001044703.2 NP_001038168.1 Accepted alive Link to Nucleotide Sequence:NM_001044703.2Link to Protein Sequence:NP_001038168.1Re-query CCDS DB by Nucleotide ID:NM_001044703Re-query CCDS DB by Protein ID:NP_001038168Link to BLAST:NP_001038168.1
Original member Current member NCBI NM_001044704.2 NP_001038169.1 Accepted alive Link to Nucleotide Sequence:NM_001044704.2Link to Protein Sequence:NP_001038169.1Re-query CCDS DB by Nucleotide ID:NM_001044704Re-query CCDS DB by Protein ID:NP_001038169Link to BLAST:NP_001038169.1
Original member Current member NCBI NM_001044705.2 NP_001038170.1 Accepted alive Link to Nucleotide Sequence:NM_001044705.2Link to Protein Sequence:NP_001038170.1Re-query CCDS DB by Nucleotide ID:NM_001044705Re-query CCDS DB by Protein ID:NP_001038170Link to BLAST:NP_001038170.1
Original member Current member NCBI NM_011757.3 NP_035887.2 Accepted alive Link to Nucleotide Sequence:NM_011757.3Link to Protein Sequence:NP_035887.2Re-query CCDS DB by Nucleotide ID:NM_011757Re-query CCDS DB by Protein ID:NP_035887Link to BLAST:NP_035887.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038168.1 555 Q07231 555 100% 0 0
NP_001038169.1 555 Q07231 555 100% 0 0
NP_001038170.1 555 Q07231 555 100% 0 0
NP_035887.2 555 Q07231 555 100% 0 0

Chromosomal Locations for CCDS 19790.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138125061 138125690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138126454 138126646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138133039 138133883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGACTAAGGTGGTGGGCATGGCCACAGTTCTGGGCCCCAGGCCACCTCAGGAATCTATGGGACCTTCGC
CCATTAAAGTAGAAGAGGATGAAGAGAAAGACAAGTGCTGCCCTACCCTAGAGCTATCCCATAAGCACTT
CAGACAGTCTGGGAACCAAGATACCCTTGAGCCAATGGGTCCTTCGACCATTAAAGCTGAAGAGGATGAA
AGCAAAGACAAGTGCCGCCCTAACCTAGAGATATCCCGTAAGAGCTTCAAGCAGTTTGGGTACCAAGACA
CTCTTGAGCAGTTGGGACCTTCGACCATTAAAGCTGAAGAGGATGATGAGAAGGATAAGGGCCACCCTAG
CCCAGAGATATCTCGACAGCGCTTCAGGCAATTTGGGTACCATGACACTCCTGGGCCCCGAGAGGCACTG
AGCCAGCTTCGGGTGCTCTGCTGTGAGTGGCTACAGCCCGAGATCCACACCAAAGAGCAGATTCTAGAGC
TACTGGTTCTGGAGCAGTTCCTGACCATCCTGCCCCGAGAGCTCCAGACCTGGGTACAGCAGCACTGCCC
TGAAAGTGCAGAGGAGGCCGTCACTCTCCTGGAAGACCTGGAGCAAGAACTTGATGAGCCAGGACTGCAG
GTCTCATCTCCTCCAAATGAACAGAAGCAGTCTTGGGAGAAAATGTCAACTTCAGGAACGGCAATGGAGT
CCTTAAGCAGTACTGAGACCCAACATGTGGATGCCAGCCCTAAATATGAGTTTTGGGGGCCCCTGTACAT
CCAAGAGACTGGTGAGGAGGAGGTTTTTACTCAGGATCCAAGAAAGCGCCAAGGTTTTAAATCGAATCCC
CAGAAGGAGGACTCAGCAGATGAGCACAGAAGTTCTGAAGAAGAGTCTCATGCAGACGGACTCAAAAGAA
CCGTCATCCCCATGATTCCTGCCAATAAGTATGGGTCACGGTCAGAAAGGCAGTGGGCCAACAACCTGGA
GAGGGAGAGAGGGACAAAAGCCTCTCTTCAAGACACAGGTTCCAGGAAAGGGGCAGAGCCAGCGTCTACT
AGGCCTGCCCCAGGAGAGAAACGTTACATATGTGCAGAGTGTGGGAAGGCCTTTAGCAATAGCTCAAACC
TCACTAAGCACCGGAGAACACACACTGGGGAGAAGCCTTATGTGTGTACAAAGTGTGGGAAGGCTTTCAG
CCACAGCTCCAACCTTACCCTTCATTACCGAACTCACCTGGTGGACCGGCCCTATGACTGTAAGTGTGGG
AAAGCCTTTGGGCAGAGCTCAGACCTCCTTAAACATCAAAGGATGCACACGGAAGAGGCGCCCTATCAGT
GTAAAGACTGTGGGAAAGCCTTTAGTGGGAAGGGCAGCCTCATTCGACACTATCGCATCCACACAGGGGA
GAAGCCCTATCAGTGTAATGAGTGTGGAAAGAGTTTTAGTCAGCATGCAGGTCTCAGTTCTCATCAGCGT
CTGCATACAGGGGAGAAACCCTATAAGTGTAAGGAGTGTGGCAAAGCCTTCAACCATAGTTCAAATTTTA
ATAAGCATCATAGAATCCATACTGGCGAAAAGCCCTATTGGTGTAGCCACTGTGGGAAAACCTTCTGTAG
CAAGTCCAATCTGTCCAAGCATCAGAGAGTTCACACTGGAGAGGGAGAAGTCCAGTAA

Translation (555 aa):
MTKVVGMATVLGPRPPQESMGPSPIKVEEDEEKDKCCPTLELSHKHFRQSGNQDTLEPMGPSTIKAEEDE
SKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAEEDDEKDKGHPSPEISRQRFRQFGYHDTPGPREAL
SQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPRELQTWVQQHCPESAEEAVTLLEDLEQELDEPGLQ
VSSPPNEQKQSWEKMSTSGTAMESLSSTETQHVDASPKYEFWGPLYIQETGEEEVFTQDPRKRQGFKSNP
QKEDSADEHRSSEEESHADGLKRTVIPMIPANKYGSRSERQWANNLERERGTKASLQDTGSRKGAEPAST
RPAPGEKRYICAECGKAFSNSSNLTKHRRTHTGEKPYVCTKCGKAFSHSSNLTLHYRTHLVDRPYDCKCG
KAFGQSSDLLKHQRMHTEEAPYQCKDCGKAFSGKGSLIRHYRIHTGEKPYQCNECGKSFSQHAGLSSHQR
LHTGEKPYKCKECGKAFNHSSNFNKHHRIHTGEKPYWCSHCGKTFCSKSNLSKHQRVHTGEGEVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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