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Report for CCDS21014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21014.1 Public Mus musculus 7 Snrpa 23 108 98 CCDS HistoryNCBI Gene:53607Re-query CCDS DB by CCDS ID:21014.1Re-query CCDS DB by GeneID:53607See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21014.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080356.9 ENSMUSP00000079228.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080356.9Link to Ensembl Protein Viewer:ENSMUSP00000079228.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000080356Re-query CCDS DB by Protein ID:ENSMUSP00000079228
Original member Current member EBI ENSMUST00000122202.7 ENSMUSP00000113678.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122202.7Link to Ensembl Protein Viewer:ENSMUSP00000113678.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122202Re-query CCDS DB by Protein ID:ENSMUSP00000113678
Original member Current member EBI ENSMUST00000163311.8 ENSMUSP00000131897.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163311.8Link to Ensembl Protein Viewer:ENSMUSP00000131897.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163311Re-query CCDS DB by Protein ID:ENSMUSP00000131897
Original member Current member NCBI NM_001046637.1 NP_001040102.1 Accepted alive Link to Nucleotide Sequence:NM_001046637.1Link to Protein Sequence:NP_001040102.1Re-query CCDS DB by Nucleotide ID:NM_001046637Re-query CCDS DB by Protein ID:NP_001040102Link to BLAST:NP_001040102.1
Original member Current member NCBI NM_001285825.1 NP_001272754.1 Accepted alive Link to Nucleotide Sequence:NM_001285825.1Link to Protein Sequence:NP_001272754.1Re-query CCDS DB by Nucleotide ID:NM_001285825Re-query CCDS DB by Protein ID:NP_001272754Link to BLAST:NP_001272754.1
Original member Current member NCBI NM_015782.3 NP_056597.3 Accepted alive Link to Nucleotide Sequence:NM_015782.3Link to Protein Sequence:NP_056597.3Re-query CCDS DB by Nucleotide ID:NM_015782Re-query CCDS DB by Protein ID:NP_056597Link to BLAST:NP_056597.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001040102.1 287 Q62189 287 100% 0 0
NP_001272754.1 287 Q62189 287 100% 0 0
NP_056597.3 287 Q62189 287 100% 0 0

Chromosomal Locations for CCDS 21014.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27187205 27187364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27188866 27188954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27189359 27189532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27191604 27191780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27192870 27193042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27195444 27195534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCCACCATAGCCACCATGCCAGTTCCCGAGACCCGTGCCAACCACACTATTTATATCAACAATCTCA
ATGAGAAGATCAAGAAGGATGAGCTCAAGAAGTCCCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCT
GGATATCCTGGTGTCTCGGATCATGAAGATGAGGGGCCAGGCCTTCGTCATCTTCAAGGAGGTCACCAGC
GCCACCAATGCCCTGCGCTCCATGCAGGGCTTCCCTTTCTACGACAAGCCCATGCGCATCCAGTACGCAA
AGACTGACTCGGACATCATTGCCAAGATGAAGGGCACCTATGTGGAGAGAGATCGCAAACGAGAGAAGAG
GAAGCCCAAGAGTCAGGAGACACCTGCTGCCAAAAAGGCTGTTCAGGGTGGGGCAGCTGCGCCCGTGGTG
GGGGCTGTCCAGCCCGTACCGGGCATGCCACCGATGCCTCAGGCACCCCGCATCATGCACCATATGCCAG
GACAGCCTCCCTACATGCCGCCACCTGGCATGATCCCGCCACCAGGCCTCGCTCCTGGCCAGATCCCCCC
TGGGGCCATGCCCCCACAGCAGCTCATGCCTGGGCAGATGCCGCCTGCCCAGCCTCTCTCCGAGAACCCA
CCCAATCACATCCTGTTCCTCACCAACCTGCCTGAGGAGACCAACGAGCTCATGCTCTCCATGCTCTTCA
ACCAGTTCCCTGGCTTCAAGGAGGTGCGTCTGGTCCCTGGGCGCCATGACATCGCCTTCGTGGAGTTTGA
CAATGAAGTGCAGGCTGGGGCAGCACGAGATGCCCTGCAAGGCTTTAAGATCACACAAAACAATGCTATG
AAGATCTCTTTTGCCAAGAAGTAG

Translation (287 aa):
MATIATMPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTS
ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGAAAPVV
GAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENP
PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAM
KISFAKK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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