NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42127.1 Public Homo sapiens 16 KNOP1 24 110 108 CCDS HistoryNCBI Gene:400506Re-query CCDS DB by CCDS ID:42127.1Re-query CCDS DB by GeneID:400506See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42127.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000219837.12 ENSP00000219837.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000219837.12Link to Ensembl Protein Viewer:ENSP00000219837.7Re-query CCDS DB by Nucleotide ID:ENST00000219837Re-query CCDS DB by Protein ID:ENSP00000219837
Original member Current member NCBI NM_001012991.3 NP_001013009.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012991.3Link to Protein Sequence:NP_001013009.2Re-query CCDS DB by Nucleotide ID:NM_001012991Re-query CCDS DB by Protein ID:NP_001013009Link to BLAST:NP_001013009.2
Original member Current member NCBI NM_001348528.2 NP_001335457.1 Accepted alive Link to Nucleotide Sequence:NM_001348528.2Link to Protein Sequence:NP_001335457.1Re-query CCDS DB by Nucleotide ID:NM_001348528Re-query CCDS DB by Protein ID:NP_001335457Link to BLAST:NP_001335457.1
Original member Current member NCBI NM_001348529.2 NP_001335458.1 Accepted alive Link to Nucleotide Sequence:NM_001348529.2Link to Protein Sequence:NP_001335458.1Re-query CCDS DB by Nucleotide ID:NM_001348529Re-query CCDS DB by Protein ID:NP_001335458Link to BLAST:NP_001335458.1
Original member Current member NCBI NM_001348530.2 NP_001335459.1 Accepted alive Link to Nucleotide Sequence:NM_001348530.2Link to Protein Sequence:NP_001335459.1Re-query CCDS DB by Nucleotide ID:NM_001348530Re-query CCDS DB by Protein ID:NP_001335459Link to BLAST:NP_001335459.1
Original member Current member NCBI NM_001348531.2 NP_001335460.1 Accepted alive Link to Nucleotide Sequence:NM_001348531.2Link to Protein Sequence:NP_001335460.1Re-query CCDS DB by Nucleotide ID:NM_001348531Re-query CCDS DB by Protein ID:NP_001335460Link to BLAST:NP_001335460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013009.2 458 Q1ED39 458 100% 0 0
NP_001335457.1 458 Q1ED39 458 100% 0 0
NP_001335458.1 458 Q1ED39 458 100% 0 0
NP_001335459.1 458 Q1ED39 458 100% 0 0
NP_001335460.1 458 Q1ED39 458 100% 0 0

Chromosomal Locations for CCDS 42127.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19706910 19707221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19710509 19710586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19711372 19711440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19714118 19715035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGATCACCAAGACACACAAAGTAGACCTTGGGCTCCCAGAGAAGAAAAAGAAGAAGAAAGTGGTCAAAG
AACCAGAGACTCGATACTCAGTTTTAAACAATGATGATTACTTTGCTGATGTTTCTCCTTTAAGAGCTAC
ATCCCCCTCTAAGAGTGTGGCCCATGGGCAGGCACCTGAGATGCCTCTAGTGAAGAAAAAGAAGAAGAAA
AAGAAGGGTGTCAGCACCCTTTGCGAGGAGCATGTAGAACCTGAGACCACGCTGCCTGCTAGACGGACAG
AGAAGTCACCCAGCCTCAGGAAGCAGGTGTTTGGCCACTTGGAGTTCCTCAGTGGGGAAAAGAAAAATAA
GAAGTCACCTCTAGCCATGTCCCATGCCTCTGGGGTGAAAACCTCCCCAGACCCTAGACAGGGTGAGGAG
GAAACCAGAGTTGGCAAGAAGCTCAAAAAACACAAGAAGGAAAAAAAGGGGGCCCAGGACCCCACAGCCT
TCTCGGTCCAGGACCCTTGGTTCTGTGAGGCCAGGGAGGCCAGGGATGTTGGGGACACTTGCTCAGTGGG
GAAGAAGGATGAGGAACAGGCAGCCTTGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAATGGG
AAGGTGAAGAAGAAAAAAAAAATCCACCAGGAGGGAGATGCCCTCCCAGGCCACTCCAAGCCCTCCAGGT
CCATGGAGAGCAGCCCTAGGAAAGGAAGTAAAAAGAAGCCAGTCAAAGTTGAGGCTCCGGAATACATCCC
CATAAGTGATGACCCTAAGGCCTCCGCAAAGAAAAAGATGAAGTCCAAAAAGAAGGTAGAGCAGCCAGTC
ATCGAGGAGCCAGCTCTGAAAAGGAAGAAAAAGAAGAAGAGGAAAGAGAGTGGGGTAGCAGGAGACCCTT
GGAAGGAGGAAACAGACACGGACTTAGAGGTGGTGTTGGAAAAAAAAGGCAACATGGATGAGGCGCACAT
AGACCAGGTGAGGCGAAAGGCCTTGCAAGAAGAGATCGATCGCGAGTCAGGCAAAACGGAAGCTTCTGAA
ACCAGGAAGTGGACGGGAACCCAGTTTGGCCAGTGGGATACTGCTGGTTTTGAGAACGAGGACCAAAAAC
TGAAATTTCTCAGACTTATGGGTGGCTTCAAAAACCTGTCCCCTTCGTTCAGCCGCCCCGCCAGCACGAT
TGCAAGGCCCAACATGGCCCTCGGCAAGAAGGCGGCTGACAGCCTGCAGCAGAATCTGCAGCGGGACTAC
GACCGGGCCATGAGCTGGAAGTACAGCCGGGGAGCCGGCCTCGGCTTCTCCACCGCCCCCAACAAGATCT
TTTACATTGACAGGAACGCTTCCAAGTCAGTCAAGCTGGAAGATTAA

Translation (458 aa):
MITKTHKVDLGLPEKKKKKKVVKEPETRYSVLNNDDYFADVSPLRATSPSKSVAHGQAPEMPLVKKKKKK
KKGVSTLCEEHVEPETTLPARRTEKSPSLRKQVFGHLEFLSGEKKNKKSPLAMSHASGVKTSPDPRQGEE
ETRVGKKLKKHKKEKKGAQDPTAFSVQDPWFCEAREARDVGDTCSVGKKDEEQAALGQKRKRKSPREHNG
KVKKKKKIHQEGDALPGHSKPSRSMESSPRKGSKKKPVKVEAPEYIPISDDPKASAKKKMKSKKKVEQPV
IEEPALKRKKKKKRKESGVAGDPWKEETDTDLEVVLEKKGNMDEAHIDQVRRKALQEEIDRESGKTEASE
TRKWTGTQFGQWDTAGFENEDQKLKFLRLMGGFKNLSPSFSRPASTIARPNMALGKKAADSLQQNLQRDY
DRAMSWKYSRGAGLGFSTAPNKIFYIDRNASKSVKLED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH