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Report for CCDS22760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22760.1 Public Mus musculus 8 Afg3l1 23 108 98 CCDS HistoryNCBI Gene:114896Re-query CCDS DB by CCDS ID:22760.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22760.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001520.12 ENSMUSP00000001520.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001520.12Link to Ensembl Protein Viewer:ENSMUSP00000001520.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001520Re-query CCDS DB by Protein ID:ENSMUSP00000001520
Original member Current member NCBI NM_054070.3 NP_473411.2 Accepted alive Link to Nucleotide Sequence:NM_054070.3Link to Protein Sequence:NP_473411.2Re-query CCDS DB by Nucleotide ID:NM_054070Re-query CCDS DB by Protein ID:NP_473411Link to BLAST:NP_473411.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473411.2 789 Q920A7-1 789 100% 0 0

Chromosomal Locations for CCDS 22760.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123477910 123478047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123480349 123480436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123481071 123481145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123484603 123484688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123485889 123486038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123487359 123487427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123488201 123488325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123489755 123490025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123492541 123492678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123492875 123493028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123493828 123493935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123494806 123494931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123498588 123498698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123499992 123500107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123501233 123501433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123501515 123501709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123501848 123502066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGTTACTGCGGCTGGTGGGGGCGGCGGGCAGTCGAGCCCTGGCCTGGCCTTTCTCCAAGCTGTGGCGAT
GTGGCGGATGCGCAGGGAGCGGCGGGACGGTCTGGAGCAGCGTGAGGGCCTGTGGCATTGCTCTGCAGGG
TCATCTGGGGAGATGCTCGCAGCAGCTGGCTCTGCAGGGAAAACTGACTTCATTTTCCCCGAGGCTGTAT
TCAAAACCTCCCAGAGGGTTTGAGAAGTTTTTTAAGAATAAGAAGAACAGAAAAAGTGCAAGCCCAGGAA
ATTCAGTACCTCCAAAAAAAGAACCAAAAAATGCTGGCCCTGGAGGAGATGGAGGCAACAGAGGAGGGAA
AGGAGATGATTTTCCCTGGTGGAAACGGATGCAAAAGGGAGAATTTCCTTGGGACGACAAGGACTTCCGG
AGCCTGGCTGTTTTGGGGGCTGGTGTGGCTGCGGGATTTTTATATTTTTATTTCCGAGATCCCGGAAAAG
AGATCACCTGGAAACACTTCGTGCAGTATTACCTGGCCAGAGGTCTGGTGGACCGGCTAGAGGTTGTGAA
CAAGCAGTTTGTGCGTGTTATTCCTGTTCCTGGGACGACATCTGAGAGGTTCGTGTGGTTTAACATTGGC
AGTGTTGACACCTTTGAACGGAACCTCGAGTCTGCTCAGTGGGAGCTGGGCATTGAGCCCACCAACCAGG
CTGCGGTGGTCTACACTACTGAGAGTGATGGCTCTTTTCTTAGAAGTCTTGTGCCCACTCTGGTCCTGGT
TAGCATCCTCCTATATGCTATGAGGAGGGGTCCAATGGGGACTGGTCGCGGTGGGCGAGGAGGAGGCCTC
TTCAGTGTTGGTGAGACAACAGCCAAGATCTTAAAGAACAACATCGATGTGCGGTTTGCAGATGTGGCTG
GCTGTGAAGAAGCCAAACTGGAAATTATGGAGTTTGTGAATTTCCTGAAGAACCCAAAGCAATATCAGGA
CTTAGGAGCCAAAATTCCAAAGGGAGCGATGCTCACTGGTCCACCTGGTACTGGCAAAACACTTCTTGCA
AAAGCAACTGCTGGGGAGGCCAACGTGCCCTTCATCACCGTGAATGGGTCGGAATTCCTGGAAATGTTTG
TTGGTGTTGGGCCAGCACGGGTCCGTGACATGTTTGCAATGGCCCGAAAACACGCTCCTTGTATTTTATT
CATTGATGAGATTGATGCAATTGGCAGAAAGCGAGGCCGTGGCCACCTGGGAGGCCAGAGTGAGCAGGAA
AACACTTTAAACCAGATGCTTGTGGAGATGGACGGGTTCAACTCTTCCACTAATGTGGTAGTGTTAGCCG
GCACCAATCGCCCTGATATCCTTGACCCAGCCCTGACACGGCCTGGCCGGTTTGACCGTCAGATCTACAT
CGGTCCCCCTGATATCAAAGGCAGGTCCTCTATTTTCAAGGTCCACTTGCGTCCACTCAAGCTGGACGGA
AGCCTCAGCAAGGACGCTCTTTCGAGGAAGCTGGCAGCTCTTACTCCAGGCTTCACTGGTGCTGATATTT
CCAATGTTTGCAATGAAGCAGCACTGATTGCTGCCCGCCACCTCAGCCCTTCTGTCCAGGAGCGGCACTT
TGAGCAAGCCATCGAGAGGGTCATTGGAGGCCTTGAGAAGAAGACCCAGGTCCTACAACCCAGTGAAAAG
ACAACTGTAGCCTACCACGAGGCTGGGCATGCAGTGGTGGGCTGGTTCTTGGAGCATGCAGACCCTCTGC
TGAAGGTGTCCATCATACCTCGAGGCAAGGGGCTTGGCTACGCCCAGTACCTTCCCCGCGAGCAGTTCCT
CTACACACGAGAGCAGCTCTTCGACCGCATGTGTATGATGCTGGGGGGTAGGGTAGCTGAGCAGCTGTTC
TTTGGTCAGATCACCACCGGAGCTCAGGACGACCTGAGGAAGGTCACCCAGAGTGCCTATGCCCAGATTG
TGCAGTTTGGGATGAGTGAGAAGCTGGGCCAGGTGTCCTTTGACTTCCCCAGACAAGGCGAAACCATGGT
GGAGAAGCCATACAGTGAGGCTACTGCCCAGCTCATTGATGAAGAGGTCCGGTGCCTCGTCAGGTCTGCC
TATAATCGGACCCTGGAGCTGCTCACACAGTGCCGGGAGCAGGTGGAGAAGGTTGGCAGGCGTCTCCTGG
AGAAAGAAGTGCTGGAGAAAGCCGACATGATAGAGCTCTTGGGCCCTCGGCCCTTTGCAGAGAAGTCCAC
CTATGAGGAATTTGTAGAGGGCACCGGCAGCCTAGAGGAGGACACATCCCTTCCTGAGGGGCTGAAAGAC
TGGAATAAGGGGCGGGAGGAAGGAGGCACTGAGCGGGGCTTGCAGGAGAGCCCTGTGTAG

Translation (789 aa):
MLLRLVGAAGSRALAWPFSKLWRCGGCAGSGGTVWSSVRACGIALQGHLGRCSQQLALQGKLTSFSPRLY
SKPPRGFEKFFKNKKNRKSASPGNSVPPKKEPKNAGPGGDGGNRGGKGDDFPWWKRMQKGEFPWDDKDFR
SLAVLGAGVAAGFLYFYFRDPGKEITWKHFVQYYLARGLVDRLEVVNKQFVRVIPVPGTTSERFVWFNIG
SVDTFERNLESAQWELGIEPTNQAAVVYTTESDGSFLRSLVPTLVLVSILLYAMRRGPMGTGRGGRGGGL
FSVGETTAKILKNNIDVRFADVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLA
KATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQE
NTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDG
SLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEK
TTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKGLGYAQYLPREQFLYTREQLFDRMCMMLGGRVAEQLF
FGQITTGAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDFPRQGETMVEKPYSEATAQLIDEEVRCLVRSA
YNRTLELLTQCREQVEKVGRRLLEKEVLEKADMIELLGPRPFAEKSTYEEFVEGTGSLEEDTSLPEGLKD
WNKGREEGGTERGLQESPV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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