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Report for CCDS89727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89727.1 Public Mus musculus 4 Smim27 23 108 98 CCDS HistoryNCBI Gene:100504309Re-query CCDS DB by CCDS ID:89727.1Re-query CCDS DB by GeneID:100504309See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000129758.2 ENSMUSP00000146567.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129758.2Link to Ensembl Protein Viewer:ENSMUSP00000146567.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129758Re-query CCDS DB by Protein ID:ENSMUSP00000146567
Original member Current member NCBI NM_001349093.1 NP_001336022.1 Accepted alive Link to Nucleotide Sequence:NM_001349093.1Link to Protein Sequence:NP_001336022.1Re-query CCDS DB by Nucleotide ID:NM_001349093Re-query CCDS DB by Protein ID:NP_001336022Link to BLAST:NP_001336022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001336022.1 49 A0A140LHV9 49 100% 0 0

Chromosomal Locations for CCDS 89727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40269675 40269719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40270038 40270142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (150 nt):
ATGAGGCCGATGAGTCGCCGAAGCCTGGACTGGACTTACTCCCTGTTGCTCCTTGCAATCGTCTTGCTCT
CTTGGGGATTCGTCATCTATGCATCGACTGTAGCTGCACGACGACAACTACAGAAGGAGTTTCCAGACAA
GTTCTTCTGA

Translation (49 aa):
MRPMSRRSLDWTYSLLLLAIVLLSWGFVIYASTVAARRQLQKEFPDKFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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