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Report for CCDS7700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7700.1 Public Homo sapiens 11 LRRC56 24 110 108 CCDS HistoryNCBI Gene:115399Re-query CCDS DB by CCDS ID:7700.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000270115.8 ENSP00000270115.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000270115.8Link to Ensembl Protein Viewer:ENSP00000270115.7Re-query CCDS DB by Nucleotide ID:ENST00000270115Re-query CCDS DB by Protein ID:ENSP00000270115
Original member Current member NCBI NM_198075.4 NP_932341.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198075.4Link to Protein Sequence:NP_932341.1Re-query CCDS DB by Nucleotide ID:NM_198075Re-query CCDS DB by Protein ID:NP_932341Link to BLAST:NP_932341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932341.1 542 Q8IYG6 542 100% 0 0

Chromosomal Locations for CCDS 7700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 540685 540861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 541537 541624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 544720 544780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 549902 549998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 550072 550272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 551131 551302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 551651 551827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 551903 551967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 552090 552232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 552569 552702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 553963 554276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGGATCTGGGCTGGGACAGATCCCGTGGGCCTCGGCGGAGCACCTCCAGCGTCCGGGTGCGGGAGCTGA
GCTGGCAAGGCCTGCACAACCCCTGCCCACAGAGCAAGGGCCCTGGCAGTCAGAGGGACAGACTTGGAGA
GCAGCTGGTGGAAGAGTACCTGTCCCCTGCCCGGCTGCAGGCCCTGGCCCGGGTGGATGACCTTCGGCTG
GTGAGGACGCTGGAGATGTGTGTGGACACTCGTGAGGGCAGCCTGGGGAACTTTGGGGTGCACCTGCCCA
ACCTGGACCAACTGAAGCTGAACGGCAGCCACCTGGGCTCCCTGAGGGACTTGGGCACGTCTCTGGGCCA
CCTGCAGGTGCTGTGGCTGGCTCGCTGTGGCCTCGCTGACCTGGATGGCATCGCCTCTTTGCCAGCACTT
AAGGAACTCTACGCCTCCTACAACAACATCTCGGACCTGAGCCCACTGTGCCTGCTGGAACAATTGGAGG
TGCTGGACCTGGAGGGCAACAGCGTGGAGGACCTGGGGCAGGTGCGCTACTTGCAGCTGTGCCCACGCCT
GGCCATGCTCACCCTGGAGGGCAACCTGGTGTGCCTACAGCCGGCCCCTGGCCCCACCAACAAGGTGCCC
AGGGGCTACAACTACAGGGCAGAGGTGAGGAAGCTCATTCCCCAGCTGCAGGTCCTGGACGAAGTGCCGG
CCGCACACACAGGCCCACCGGCCCCCCCGCGGCTGAGCCAGGACTGGCTTGCGGTGAAGGAGGCCATCAA
GAAGGGCAACGGCCTTCCCCCGCTGGACTGTCCCCGTGGAGCCCCCATCCGGAGACTTGACCCCGAGCTG
TCCCTGCCTGAGACGCAGTCCCGGGCCTCCAGGCCCTGGCCCTTCTCCCTGCTGGTCCGTGGGGGCCCCC
TGCCTGAAGGCCTGCTTTCTGAGGACCTGGCCCCAGAAGATAACACCAGCAGCCTCACCCATGGTGCTGG
CCAAGTCCTCTGTGGGAACCCCACCAAGGGCCTGCGGGAGCGTAGGCACCAGTGCCAGGCCAGGGAGCCC
CCCGAGCAGCTGCCCCAACACAGGCCAGGAGATCCGGCCGCCAGCACTTCCACCCCAGAGCCTGACCCTG
CAGACAGCTCTGACTTCCTGGCCTTGGCTGGGCTCAGGGCCTGGAGGGAACATGGCGTGCGCCCCCTCCC
CTATAGGCACCCGGAGTCCCAACAGGAAGGGGCTGTAGCCCCCTGGGGCCCACGGAGGGTCCCTGAAGAG
CAAGTGCACCAGGCAGAGCCCAAGACTCCCTCCAGCCCCCCAAGCCTGGCCTCAGAGCCCTCCGGGACCT
CGAGCCAGCACCTGGTCCCTTCACCTCCCAAGCACCCAAGGCCACGAGATTCTGGCAGCAGCTCCCCGCG
GTGGTCGACAGACCTGCAGTCCAGGGGGCGTCGGCTCCGAGTCCTGGGCAGCTGGGGGCCTGGCCTGGGT
GATGGGGTGGCTGCAGTGCCTGTCCTGAGAGCCCTGGAGGTGGCCTCACGCCTGAGCCCTCGAGCCCAGG
GATGTCCTGGCCCAAAGCCAGCACCAGATGCAGCAGCTAGACCTCCCAGGGCAGCTGAACTCTCTCACCC
CAGCCCCGTCCCCACTTAA

Translation (542 aa):
MDLGWDRSRGPRRSTSSVRVRELSWQGLHNPCPQSKGPGSQRDRLGEQLVEEYLSPARLQALARVDDLRL
VRTLEMCVDTREGSLGNFGVHLPNLDQLKLNGSHLGSLRDLGTSLGHLQVLWLARCGLADLDGIASLPAL
KELYASYNNISDLSPLCLLEQLEVLDLEGNSVEDLGQVRYLQLCPRLAMLTLEGNLVCLQPAPGPTNKVP
RGYNYRAEVRKLIPQLQVLDEVPAAHTGPPAPPRLSQDWLAVKEAIKKGNGLPPLDCPRGAPIRRLDPEL
SLPETQSRASRPWPFSLLVRGGPLPEGLLSEDLAPEDNTSSLTHGAGQVLCGNPTKGLRERRHQCQAREP
PEQLPQHRPGDPAASTSTPEPDPADSSDFLALAGLRAWREHGVRPLPYRHPESQQEGAVAPWGPRRVPEE
QVHQAEPKTPSSPPSLASEPSGTSSQHLVPSPPKHPRPRDSGSSSPRWSTDLQSRGRRLRVLGSWGPGLG
DGVAAVPVLRALEVASRLSPRAQGCPGPKPAPDAAARPPRAAELSHPSPVPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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