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Report for CCDS10435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10435.1 Public Homo sapiens 16 TSR3 24 110 108 CCDS HistoryNCBI Gene:115939Re-query CCDS DB by CCDS ID:10435.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10435.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000007390.3 ENSP00000007390.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000007390.3Link to Ensembl Protein Viewer:ENSP00000007390.2Re-query CCDS DB by Nucleotide ID:ENST00000007390Re-query CCDS DB by Protein ID:ENSP00000007390
Original member Current member NCBI NM_001001410.3 NP_001001410.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001410.3Link to Protein Sequence:NP_001001410.1Re-query CCDS DB by Nucleotide ID:NM_001001410Re-query CCDS DB by Protein ID:NP_001001410Link to BLAST:NP_001001410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001410.1 312 Q9UJK0 312 100% 0 0

Chromosomal Locations for CCDS 10435.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1349437 1349608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1349889 1349952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1350058 1350234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1350807 1351000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1351379 1351598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1351693 1351804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGGCCGCAGGAGGGCAGCGCGCGGGCCGGGGGCGGAAGGCGGCCGCCCTCGGCACCTCCCGACGCGCT
CCCTGGAGGCCTTCGCCGAGGAGGTCGGCGCCGCGCTGCAGGCTTCCGTGGAGCCAGGGGCGGCTGACGG
CGAGGGCGGCCCGGGCCCGGCGGCGCTGCCCTGCACGCTGGCCATGTGGGAGTTGGGCCACTGCGACCCC
CGGCGCTGCACGGGCCGCAAGCTGGCCCGCCTGGGGCTGGTGCGCTGCCTGCGCCTGGGCCACAGATTCG
GCGGTCTGGTGCTGAGCCCCGTGGGCAAGCAGTACGCGTCCCCCGCAGACAGACAGCTGGTGGCGCAGTC
TGGGGTCGCCGTCATCGACTGCTCCTGGGCCAGGCTGGACGAGACACCGTTTGGGAAGATGCGAGGGAGC
CACTTGCGCCTGTTGCCCTACCTGGTGGCCGCCAACCCCGTGAACTATGGCCGGCCCTACAGACTTTCCT
GCGTGGAAGCGTTTGCTGCCACCTTCTGCATCGTAGGCTTTCCAGACCTTGCTGTCATTTTGCTGCGGAA
GTTTAAATGGGGCAAGGGCTTCTTGGACCTGAACCGCCAGCTCCTGGACAAGTACGCGGCCTGCGGCAGC
CCGGAGGAGGTGCTGCAGGCGGAGCAGGAGTTCTTGGCCAATGCCAAGGAGAGCCCCCAGGAGGAGGAGA
TCGATCCCTTCGATGTGGATTCAGGGAGAGAGTTTGGAAACCCCAACAGGCCTGTGGCCAGCACCCGGCT
GCCCTCGGACACTGATGACAGTGATGCGTCTGAGGACCCAGGGCCTGGCGCCGAGCGCGGAGGAGCCAGC
AGCAGCTGCTGTGAAGAGGAGCAGACGCAGGGACGGGGGGCTGAGGCCAGGGCCCCGGCTGAGGTTTGGA
AAGGAATCAAGAAACGGCAGAGAGACTGA

Translation (312 aa):
MGRRRAARGPGAEGGRPRHLPTRSLEAFAEEVGAALQASVEPGAADGEGGPGPAALPCTLAMWELGHCDP
RRCTGRKLARLGLVRCLRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGS
HLRLLPYLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYAACGS
PEEVLQAEQEFLANAKESPQEEEIDPFDVDSGREFGNPNRPVASTRLPSDTDDSDASEDPGPGAERGGAS
SSCCEEEQTQGRGAEARAPAEVWKGIKKRQRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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