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Report for CCDS7048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7048.1 Public Homo sapiens 9 ZMYND19 24 110 108 CCDS HistoryNCBI Gene:116225Re-query CCDS DB by CCDS ID:7048.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7048.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298585.3 ENSP00000298585.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298585.3Link to Ensembl Protein Viewer:ENSP00000298585.2Re-query CCDS DB by Nucleotide ID:ENST00000298585Re-query CCDS DB by Protein ID:ENSP00000298585
Original member Current member NCBI NM_138462.3 NP_612471.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138462.3Link to Protein Sequence:NP_612471.1Re-query CCDS DB by Nucleotide ID:NM_138462Re-query CCDS DB by Protein ID:NP_612471Link to BLAST:NP_612471.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612471.1 227 Q96E35 227 100% 0 0

Chromosomal Locations for CCDS 7048.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 137582543 137582686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137582983 137583163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137586967 137587107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137587717 137587823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137588659 137588718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137590213 137590263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGACCGACTTCAAATTGGGTATCGTGCGGCTCGGCCGGGTGGCCGGGAAGACCAAATACACGCTGATCG
ATGAGCAGGACATCCCGCTGGTGGAGAGCTACTCCTTTGAGGCCCGAATGGAAGTGGATGCAGATGGAAA
TGGTGCTAAGATATTTGCCTATGCCTTTGACAAGAACCGAGGAAGGGGCTCTGGGAGACTCCTTCATGAG
CTGCTGTGGGAGCGGCACCGGGGGGGCGTGGCCCCGGGCTTCCAGGTGGTGCACCTCAACGCTGTGACCG
TGGACAATCGCCTGGACAACCTGCAACTGGTGCCGTGGGGCTGGCGGCCCAAGGCTGAAGAGACCTCCAG
CAAGCAGAGGGAGCAAAGCTTGTATTGGCTTGCAATTCAGCAGCTGCCTACAGACCCTATAGAAGAACAG
TTTCCTGTCCTAAATGTGACCCGGTATTATAATGCCAACGGGGATGTAGTGGAAGAGGAGGAGAACTCTT
GCACCTACTATGAGTGCCACTACCCTCCCTGCACAGTGATTGAGAAGCAGCTCCGGGAGTTCAACATCTG
TGGGCGCTGCCAGGTGGCCCGGTACTGCGGCTCCCAGTGCCAGCAGAAGGACTGGCCTGCCCACAAGAAG
CACTGTCGGGAGAGGAAGCGTCCCTTCCAGCATGAGCTTGAGCCAGAGCGATGA

Translation (227 aa):
MTDFKLGIVRLGRVAGKTKYTLIDEQDIPLVESYSFEARMEVDADGNGAKIFAYAFDKNRGRGSGRLLHE
LLWERHRGGVAPGFQVVHLNAVTVDNRLDNLQLVPWGWRPKAEETSSKQREQSLYWLAIQQLPTDPIEEQ
FPVLNVTRYYNANGDVVEEEENSCTYYECHYPPCTVIEKQLREFNICGRCQVARYCGSQCQQKDWPAHKK
HCRERKRPFQHELEPER


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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