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Report for CCDS41718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41718.1 Public Homo sapiens 11 NXPE4 24 110 108 CCDS HistoryNCBI Gene:54827Re-query CCDS DB by CCDS ID:41718.1Re-query CCDS DB by GeneID:54827See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41718.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375478.4 ENSP00000364627.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375478.4Link to Ensembl Protein Viewer:ENSP00000364627.3Re-query CCDS DB by Nucleotide ID:ENST00000375478Re-query CCDS DB by Protein ID:ENSP00000364627
Original member Current member NCBI NM_001077639.2 NP_001071107.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077639.2Link to Protein Sequence:NP_001071107.1Re-query CCDS DB by Nucleotide ID:NM_001077639Re-query CCDS DB by Protein ID:NP_001071107Link to BLAST:NP_001071107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071107.1 544 Q6UWF7-1 544 100% 0 0

Chromosomal Locations for CCDS 41718.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 114570938 114571473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114580132 114580338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114581725 114581786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114582288 114583021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 114594664 114594759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGAAAATAAGTATGATAAATTATAAGTCACTATTGGCACTGTTGTTTATATTAGCCTCCTGGATCATTT
TTACAGTTTTCCAGAACTCCACAAAGGTTTGGTCTGCTCTAAACTTATCCATCTCCCTCCATTACTGGAA
CAACTCCACAAAGTCCTTATTCCCTAAAACACCACTGATATCATTAAAGCCACTAACAGAGACTGAACTC
AGAATAAAGGAAATCATAGAGAAACTAGATCAGCAGATCCCACCCAGACCTTTCACCCACGTGAACACCA
CCACCAGCGCCACACATAGCACAGCCACCATCCTCAACCCTCGAGATACGTACTGCAGGGGAGACCAGCT
GCACATCCTGCTGGAGGTGAGGGACCACTTGGGACGCAGGAAGCAATATGGCGGGGATTTCCTGAGGGCC
AGGATGTCTTCCCCAGCGCTGATGGCAGGTGCTTCAGGAAAGGTGACTGACTTCAACAACGGCACCTACC
TGGTCAGCTTCACTCTGTTCTGGGAGGGCCAGGTCTCTCTGTCTCTGCTGCTCATCCACCCCAGTGAAGG
GGTGTCAGCTCTCTGGAGTGCAAGGAACCAAGGCTATGACAGGGTGATCTTCACTGGCCAGTTTGTCAAT
GGCACTTCCCAAGTCCACTCTGAATGTGGCCTGATCCTAAACACAAATGCTGAATTGTGCCAGTACCTGG
ACAACAGAGACCAAGAAGGCTTCTACTGTGTGAGGCCTCAACACATGCCCTGTGCTGCACTCACTCACAT
GTATTCTAAGAACAAGAAAGTTTCTTATCTTAGCAAACAAGAAAAGAGCCTCTTTGAAAGGTCAAATGTG
GGTGTAGAGATTATGGAAAAATTCAATACAATTAGTGTCTCCAAATGCAACAAAGAAACAGTTGCAATGA
AAGAGAAATGCAAGTTTGGAATGACATCCACAATCCCCAGTGGGCATGTCTGGAGAAACACATGGAATCC
TGTCTCCTGTAGTTTGGCTACAGTCAAAATGAAGGAATGCCTGAGAGGAAAACTCATATACCTAATGGGA
GATTCCACGATCCGCCAGTGGATGGAATACTTCAAAGCCAGTATCAACACACTGAAGTCAGTGGATCTGC
ATGAATCTGGAAAATTGCAACACCAGCTTGCTGTGGATTTGGATAGGAACATCAACATCCAGTGGCAAAA
ATATTGTTATCCCTTGATAGGATCAATGACCTATTCAGTCAAAGAGATGGAGTACCTCACCCGGGCCATT
GACAGAACTGGAGGAGAAAAAAATACTGTCATTGTTATTTCCCTGGGCCAGCATTTCAGACCCTTTCCCA
TTGATGTTTTTATCCGAAGGGCCCTCAATGTCCACAAAGCCATTCAGCATCTTCTTCTGAGAAGCCCAGA
CACTATGGTTATCATCAAAACAGAAAACATCAGGGAGATGTACAATGATGCAGAAAGATTTAGTGACTTT
CATGGTTACATTCAATATCTCATCATAAAGGACATTTTCCAGGATCTCAGTGTGAGTATCATTGATGCCT
GGGATATAACAATTGCATATGGCACAAATAATGTACACCCACCTCAACATGTAGTCGGAAATCAGATTAA
TATATTATTAAACTATATTTGTTAA

Translation (544 aa):
MKISMINYKSLLALLFILASWIIFTVFQNSTKVWSALNLSISLHYWNNSTKSLFPKTPLISLKPLTETEL
RIKEIIEKLDQQIPPRPFTHVNTTTSATHSTATILNPRDTYCRGDQLHILLEVRDHLGRRKQYGGDFLRA
RMSSPALMAGASGKVTDFNNGTYLVSFTLFWEGQVSLSLLLIHPSEGVSALWSARNQGYDRVIFTGQFVN
GTSQVHSECGLILNTNAELCQYLDNRDQEGFYCVRPQHMPCAALTHMYSKNKKVSYLSKQEKSLFERSNV
GVEIMEKFNTISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCSLATVKMKECLRGKLIYLMG
DSTIRQWMEYFKASINTLKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIGSMTYSVKEMEYLTRAI
DRTGGEKNTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLRSPDTMVIIKTENIREMYNDAERFSDF
HGYIQYLIIKDIFQDLSVSIIDAWDITIAYGTNNVHPPQHVVGNQINILLNYIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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