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Report for CCDS38020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38020.1 Public Mus musculus 19 Sorcs3 23 108 98 CCDS HistoryNCBI Gene:66673Re-query CCDS DB by CCDS ID:38020.1Re-query CCDS DB by GeneID:66673See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078880.5 ENSMUSP00000077919.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078880.5Link to Ensembl Protein Viewer:ENSMUSP00000077919.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000078880Re-query CCDS DB by Protein ID:ENSMUSP00000077919
Original member Current member NCBI NM_025696.3 NP_079972.1 Accepted alive Link to Nucleotide Sequence:NM_025696.3Link to Protein Sequence:NP_079972.1Re-query CCDS DB by Nucleotide ID:NM_025696Re-query CCDS DB by Protein ID:NP_079972Link to BLAST:NP_079972.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079972.1 1219 Q8VI51 1219 100% 0 0

Chromosomal Locations for CCDS 38020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48206180 48206797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48398696 48398763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48487390 48487489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48535455 48535613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48603843 48603916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48645783 48645847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48653994 48654112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48683567 48683656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48693821 48694000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48704218 48704364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48705909 48706011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48710567 48710643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48713482 48713573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48722890 48722997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48748240 48748357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48749264 48749397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48759846 48759959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48764134 48764305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48766961 48767147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48772260 48772393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48788390 48788513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48790129 48790241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48794144 48794275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48796368 48796467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48797410 48797515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48802649 48802809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48803622 48803686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3660 nt):
ATGGAGGCGGCAGGCACTGAGCGCCCCGCAGGCTGGCCCGGGGCACCCCTCGCCCGGACTGGGCTGCTGC
TCTTGTCAACATGGGTCCTGGCCGGCGCCGAGATCACTTGGGGCGCGACAGGAGGTCCGGGGCGCCTGGT
GTCCCCGGCTTCACGACCACCAGTGTTGCCTCCTCTCTTGCCACGGGCAGCGGAGAACCGGTGGCCTGAG
GAGCTGGCATCTGCACGGAGAGCCGCTGCACCGAGACGCCGGTCCAGGCTAGAGCCACTATCCCAGGCGA
GCCGCGGGGAGATACGGACTGAAGCTGCGGGAATGTCGCCTGAAGGCGCTAGGTGGGTCCCGGGCATTCC
ATCTCCTAGCCAGGCGGGCAGTGCGAGGAGGACTCGCCGGGCGCAGCCCCCAAGCCCCCTGGAGCGCGGG
GACTCTTGGGCTACTGCTCTCGCAGATGGTGCCAAAGGAAGCCGTCCTCACACCAAGGGTTCGCGAGAGG
AGGTGAGGGCGACGCGGACTGGAGGAGCGTCCACTGAGGAGCTCCGGCTGCCCAGCACGTCTTTTGCACT
GACCGGGGACTCGGCTCATAACCAAGCCATGGTGCACTGGTCGGGACACAACAGCAGTGTCATACTGATC
CTGACGAAGCTCTATGACTTCAACCTGGGGAGTGTGACTGAGAGTTCTCTGTGGAGGTCAGTAGATTATG
GCGCCACCTATGAAAAACTTAATGACAAAGTGGGTTTGAAGACCGTCCTCAGTTATCTCTATGTCAACCC
CACCAACAAAAGGAAGATCATGCTCCTTAGTGACCCCGAGATGGAGAGCAGTGTACTGATCAGCTCAGAT
GAAGGGGCGACCTACCAAAAGTACCGGCTTACATTCTACATCCAGAGCCTGCTCTTCCATCCCAAGCAGG
AGGACTGGGTGCTGGCCTACAGCTTGGACCAAAAGCTTTATAGCTCCATGGACTTCGGCAGACGATGGCA
ACTCATGCATGAACGCATCACGCCCAACAGGTTTTACTGGTCGGTGTCTGGACTGGATAAGGAGGCAGAC
CTGGTGCACATGGAAGTGAGGACGGCAGATGGATATGCCCACTACCTCACCTGCAGAATCCAAGAATGTG
CTGAGACAACTCGGAGCGGCCCTTTTGCCCGCTCCATTGACATCAGCTCCTTGGTTGTCCAGGATGAATA
TATCTTCATTCAGGTAACAATAGGTGGACGAGCCAGCTACTACGTGTCGTATCGAAGAGAAGCCTTTGCC
CAGATAAAGCTGCCCAAGTACTCCTTGCCAAAGGACATGCACATTATCAGTACCGATGAGAACCAAGTGT
TTGCAGCCGTCCAAGAATGGAACCAGAATGACACCTACAACCTCTACATCTCAGACACACGTGGGATCTA
CTTTACCCTGGCTATGGAGAACATTAAGAGCAGCCGAGGTCTAATGGGAAACATCATTATTGAATTATAT
GAGGTAGCAGGTATCAAGGGGATATTCCTGGCAAACAAGAAGGTGGATGACCAGGTGAAGACATACATCA
CTTACAACAAAGGCAGGGATTGGCGTCTCCTGCAAGCTCCAGATGTGGACCTGAGAGGAAGCCCAGTGCA
CTGTTTACTGCCCTTCTGTTCCCTACACTTGCATCTGCAGCTCTCTGAAAACCCATATTCCTCTGGAAGA
ATCTCCAGCAAGGACACAGCGCCTGGACTTGTGGTTGCCACGGGTAATATTGGCTCCGAACTCTCCTATA
CGGATATCGGTGTGTTCATCTCCTCTGATGGGGGCAACACATGGAGACAGATCTTTGATGAAGAATACAA
TGTCTGGTTCCTAGACTGGGGTGGTGCTCTGGTGGCCATGAAGCACACACCTCTGCCAGTCAGGCATTTG
TGGGTGAGTTTTGATGAGGGCCATTCCTGGGACAAGTATGGTTTCACATTGCTGCCTCTTTTCGTGGATG
GGGCGTTGGTGGAGGCAGGAGTAGAGACGCACATCATGACAGTTTTTGGCCACTTCAGCCTGCGCTCCGA
ATGGCAGTTGGTGAAAGTGGACTACAAGTCTATCTTCAGCCGGCGCTGTACCAAGGAGGACTTTGAGACT
TGGCACCTGCTCAATCAGGGAGAGCCTTGTGTCATGGGGGAAAGGAAAATATTCAAGAAACGCAAGCCAG
GCGCTCAGTGTGCCCTTGGCAGAGAGTACTCTGGGTCGGTGGTGTCAGAACCCTGTGTCTGTGCGGACTG
GGACTTCGAATGTGACTATGGCTATGAGAGACATGGAGAGAGCCAGTGTGTCCCAGCTTTCTGGTACAAC
CCAGCTTCCCCTTCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGGGTACCGGAGGATTG
TATCCAACAACTGCACAGATGGGCTAAGGGATAAGTACTCTGCTAAGACTCAGTTGTGTCCTGGAAAAGC
TCCTCGGGGCCTCCATGTGGTGACCACTGACGGGCGCCTGGTGGCAGAACAGGGCCACAATGCAACCTTC
ATCATTCTAATGGAGGAGGGTGACCTTCAAAGGACAAACATCCAGCTTGACTTTGGAGATGGGGTGGCTG
TATCCTATGCCAACTTCAGCCCCATTGAGGATGGCATCAGGCATGTGTATAAGAGCGCGGGGATCTTCCA
GGTGACAGCTTATGCGGAGAACAACCTTGGCTCGGACACAGCCTTCCTCTTCCTGCATGTGGTTTGTCCA
GTGGAACACGTTCACCTTCGAGTCCCATTCGTCGCAATACGGAATAAGGACGTCAACATCAGTGCAGTTG
TGTGGCCCAGTCAGCTAGGGACCCTCACCTACTTCTGGTGGTTTGGAAATAGCACAAAGCCCCTCATCAC
CTTGGACAGCAGCATCTCTTTCACATTCCTTGCAGAGGGAACCAACACCATCACTGTCCAGGTTGCTGCT
GGGAATGCCCTCATCCAAGACACAAAAGAGATTGCAGTACATGAATACTTCCAGTCACAGCTCTTATCGT
TCTCTCCAAATCTGGATTACCACAATCCTGATATCCCTGAGTGGAGGCAAGACATTGGCAATGTCATCAA
GCGAGCTCTGATTAAAGTGACCAGTGTCCCAGAAGACCAGATCCTCGTGGCTGTGTTCCCGGGTCTCCCT
ACTTCAGCAGAGCTTTTCATTCTCCCACCTAAGAACTTGACAGAGAGGAGGAAAGGCCACGAAGGGGATC
TCGAACAAATTGTAGAGACACTATTTAATGCGCTTAATCAAAACTTGGTACAGTTTGAGCTGAAGCCAGG
TGTCCAGGTCATTGTTTATGTCACACAGCTGACATTAGCTCCCCTGGTGGACTCCAGCGCTGGGCATAGC
AGCTCTGCCATGCTTATGCTCCTCTCGGTGGTATTCGTCGGCTTGGCTGTGTTTCTGATCTACAAGTTTA
AAAGGAAAATCCCCTGGATTAACATCTATGCCCAAGTCCAACATGACAAGGAACAGGAGATGATCGGGTC
AGTGAGCCAAAGTGAGAATGCACCCAAAATCACACTCAGTGACTTCACCGAGCCCGAGGAGCTGCTGGAC
AAAGAGCTGGACACGCGGGTCATAGGAAGCATTGCCACCATTGCAAGCAGCGAGAGCACAAAGGAGATCC
CCAACTGCACTAGTGTTTAA

Translation (1219 aa):
MEAAGTERPAGWPGAPLARTGLLLLSTWVLAGAEITWGATGGPGRLVSPASRPPVLPPLLPRAAENRWPE
ELASARRAAAPRRRSRLEPLSQASRGEIRTEAAGMSPEGARWVPGIPSPSQAGSARRTRRAQPPSPLERG
DSWATALADGAKGSRPHTKGSREEVRATRTGGASTEELRLPSTSFALTGDSAHNQAMVHWSGHNSSVILI
LTKLYDFNLGSVTESSLWRSVDYGATYEKLNDKVGLKTVLSYLYVNPTNKRKIMLLSDPEMESSVLISSD
EGATYQKYRLTFYIQSLLFHPKQEDWVLAYSLDQKLYSSMDFGRRWQLMHERITPNRFYWSVSGLDKEAD
LVHMEVRTADGYAHYLTCRIQECAETTRSGPFARSIDISSLVVQDEYIFIQVTIGGRASYYVSYRREAFA
QIKLPKYSLPKDMHIISTDENQVFAAVQEWNQNDTYNLYISDTRGIYFTLAMENIKSSRGLMGNIIIELY
EVAGIKGIFLANKKVDDQVKTYITYNKGRDWRLLQAPDVDLRGSPVHCLLPFCSLHLHLQLSENPYSSGR
ISSKDTAPGLVVATGNIGSELSYTDIGVFISSDGGNTWRQIFDEEYNVWFLDWGGALVAMKHTPLPVRHL
WVSFDEGHSWDKYGFTLLPLFVDGALVEAGVETHIMTVFGHFSLRSEWQLVKVDYKSIFSRRCTKEDFET
WHLLNQGEPCVMGERKIFKKRKPGAQCALGREYSGSVVSEPCVCADWDFECDYGYERHGESQCVPAFWYN
PASPSKDCSLGQSYLNSTGYRRIVSNNCTDGLRDKYSAKTQLCPGKAPRGLHVVTTDGRLVAEQGHNATF
IILMEEGDLQRTNIQLDFGDGVAVSYANFSPIEDGIRHVYKSAGIFQVTAYAENNLGSDTAFLFLHVVCP
VEHVHLRVPFVAIRNKDVNISAVVWPSQLGTLTYFWWFGNSTKPLITLDSSISFTFLAEGTNTITVQVAA
GNALIQDTKEIAVHEYFQSQLLSFSPNLDYHNPDIPEWRQDIGNVIKRALIKVTSVPEDQILVAVFPGLP
TSAELFILPPKNLTERRKGHEGDLEQIVETLFNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSAGHS
SSAMLMLLSVVFVGLAVFLIYKFKRKIPWINIYAQVQHDKEQEMIGSVSQSENAPKITLSDFTEPEELLD
KELDTRVIGSIATIASSESTKEIPNCTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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