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Report for CCDS23356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23356.1 Public Mus musculus 9 Gcm1 23 108 98 CCDS HistoryNCBI Gene:14531Re-query CCDS DB by CCDS ID:23356.1Re-query CCDS DB by GeneID:14531See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024104.8 ENSMUSP00000024104.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024104.8Link to Ensembl Protein Viewer:ENSMUSP00000024104.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024104Re-query CCDS DB by Protein ID:ENSMUSP00000024104
Original member Current member NCBI NM_008103.3 NP_032129.2 Accepted alive Link to Nucleotide Sequence:NM_008103.3Link to Protein Sequence:NP_032129.2Re-query CCDS DB by Nucleotide ID:NM_008103Re-query CCDS DB by Protein ID:NP_032129Link to BLAST:NP_032129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032129.2 436 P70348 436 100% 0 0

Chromosomal Locations for CCDS 23356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 78053917 78053991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78059576 78059828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78061348 78061460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78062411 78062539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 78064349 78065089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGGAACTGGACGACTTTGATCCTGAAGACAAAGAGATACTGAGCTGGGACATTAACGATGTGAAACTGC
CTCAGAACGTGAAAACGACTGACTGGTTCCAGGAGTGGCCGGACTCCTACGTGAAACACATCTACAGCTC
GGACGACAGGAACGCACAGCGCCACCTGAGCAGCTGGGCCATGCGCAACACCAACAACCACAACTCCCGG
ATCCTCAAGAAGTCATGCCTGGGGGTAGTGGTGTGCAGCAGGGACTGCTCCACAGAGGAAGGCCGCAAGA
TTTACCTGAGACCCGCCATCTGTGACAAAGCCAGACAGAAGCAGCAGAGGAAAAGCTGTCCCAACTGCAA
TGGACCCCTGAAGCTTATTCCCTGCCGAGGCCACGGCGGCTTCCCGGTCACCAACTTCTGGAGGCACGAC
GGACGCTTCATCTTTTTCCAGTCCAAAGGCGAGCATGATCATCCCAGGCCGGAGACCAAGCTGGAAGCAG
AGGCAAGAAGAGCCATGAAGAAAGTGCACATGGCATCTGCCTCCAACTCCTTACGGATGAAGGGGAGACC
AGCAGCGAAGGCGCTTCCTGCTGAAATCCCGAGTCAGGGAAGTTTACCTTTAACTTGGTCATTCCAGGAA
GGCGTCCAACTGCCCGGCACTTACAGCACACCTTTAATAGCTAACGCCCCCCAGCAGAACTCCCTGAATG
ATTGCTTATCCTTCCCCAAGAGTTATGATTTGGGGGGAAGCACTGAGCTGGAAGATCCAACTTCCACCTT
AGATTCCATGAAGTTCTATGAGAGATGCAAATTCTCCAGCAGTAGGATCTACGGCAGTGAAGAGCAGTTT
CAGCCTCCTGTCCCTGGGACGTATGGAGACTACGAAGACCTGCAAACTTGGAATAAAAATGTTGCCTTAG
GGAGAAATCCCTCCGATGACATCTACTATCCAGCCTATCCTCTGCCTGTGGCCAGCTGGCCCTACGACTA
CTTTCCCTCCCAGAACTCTTTGGAGCACTTACCCCAGCAAGTTCCATCAGAACCCCCTGCAGCTCAACCA
GGCTGTCATCCCTTGTGGTCCAATCCGGGAGGTGAGCCTTACGAAGAGAAAGTATCTGTGGATCTGAGCA
GCTATGTGCCCTCCCTCACGTACCACCCACCTCAGCAGGATCCCTTCCTGCTCACCTATGGCTCTCCTAC
TCAGCAGCAACATGCACTGCCCGGCAAGAGCAACAGGTGGGATTTTGACGAAGAGATGGCATGCATGGGC
TTAGATCACTTCAACAATGAGATGCTCCTAAACTTCTGTTCTTTAAGATAA

Translation (436 aa):
MELDDFDPEDKEILSWDINDVKLPQNVKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSWAMRNTNNHNSR
ILKKSCLGVVVCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPLKLIPCRGHGGFPVTNFWRHD
GRFIFFQSKGEHDHPRPETKLEAEARRAMKKVHMASASNSLRMKGRPAAKALPAEIPSQGSLPLTWSFQE
GVQLPGTYSTPLIANAPQQNSLNDCLSFPKSYDLGGSTELEDPTSTLDSMKFYERCKFSSSRIYGSEEQF
QPPVPGTYGDYEDLQTWNKNVALGRNPSDDIYYPAYPLPVASWPYDYFPSQNSLEHLPQQVPSEPPAAQP
GCHPLWSNPGGEPYEEKVSVDLSSYVPSLTYHPPQQDPFLLTYGSPTQQQHALPGKSNRWDFDEEMACMG
LDHFNNEMLLNFCSLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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