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Report for CCDS37053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37053.1 Public Mus musculus 15 Ropn1l 23 108 98 CCDS HistoryNCBI Gene:252967Re-query CCDS DB by CCDS ID:37053.1Re-query CCDS DB by GeneID:252967See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110408.2 ENSMUSP00000106038.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110408.2Link to Ensembl Protein Viewer:ENSMUSP00000106038.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110408Re-query CCDS DB by Protein ID:ENSMUSP00000106038
Original member Current member NCBI NM_145852.2 NP_665851.2 Accepted alive Link to Nucleotide Sequence:NM_145852.2Link to Protein Sequence:NP_665851.2Re-query CCDS DB by Nucleotide ID:NM_145852Re-query CCDS DB by Protein ID:NP_665851Link to BLAST:NP_665851.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665851.2 218 Q9EQ00 218 100% 0 0

Chromosomal Locations for CCDS 37053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 31441317 31441380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31443292 31443467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31448964 31449125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31451082 31451205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31453413 31453543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGCCGCTGCCCGACACCATGTTCTGCGCGCAGCAGATCCACATCCCCCCGGAGCTGCCGGACATCCTCA
AGCAGTTCACCAAGGCTGCCATCCGTACGCAGCCGGCGGACGTGCTGCAGTGGTCGGCGGGGTATTTTTC
AGCCCTGTCCAGAGGAGACCCACTTCCTGTAAAGGACAGAATTGAAATGCCTGTGGCCACACAGAAGACT
GACACAGGCCTGACCCAGGGACTCCTGAAAGTCCTGCACAAGCAGTGTAGCCACAAGCAATATGTGGAGT
TAGCAGATCTTGAGAAGAAGTGGAAAAATTTGTGCCTGCCAGTAGAAAAGCTCAGAACGATCCTGGAGCT
GGATCCATGTGAGGACAAAATAGAGTGGATCAAGTTTTTAGCGCTCGGATGCAGCTCCCTGGGCAGGACC
CTGAACACGGCCATGAAGAACGTGTGTGAGATCCTCACCTCTGACCCGGAGGGCGGGCCTGCTCGCATCC
CCTTTGAAACCTTTGCCTATGTTTACCAGTACTTGTCTGGACTGGACCCAGAACTCCCGGCCGTGGAGAC
CGAGAACTATCTTACCAGTTTAAGACTGATGTCAGAATCTAGAAAGAATGGCATGATAGGACTTTCGGAC
TTCTTCGTTGGAAAAAAGATAATATAG

Translation (218 aa):
MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLQWSAGYFSALSRGDPLPVKDRIEMPVATQKT
DTGLTQGLLKVLHKQCSHKQYVELADLEKKWKNLCLPVEKLRTILELDPCEDKIEWIKFLALGCSSLGRT
LNTAMKNVCEILTSDPEGGPARIPFETFAYVYQYLSGLDPELPAVETENYLTSLRLMSESRKNGMIGLSD
FFVGKKII


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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