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Report for CCDS53332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53332.1 Public Homo sapiens 1 SRSF11 24 110 108 CCDS HistoryNCBI Gene:9295Re-query CCDS DB by CCDS ID:53332.1Re-query CCDS DB by GeneID:9295See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53332.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370951.5 ENSP00000359989.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370951.5Link to Ensembl Protein Viewer:ENSP00000359989.1Re-query CCDS DB by Nucleotide ID:ENST00000370951Re-query CCDS DB by Protein ID:ENSP00000359989
Original member Current member NCBI NM_001190987.3 NP_001177916.1 Accepted alive Link to Nucleotide Sequence:NM_001190987.3Link to Protein Sequence:NP_001177916.1Re-query CCDS DB by Nucleotide ID:NM_001190987Re-query CCDS DB by Protein ID:NP_001177916Link to BLAST:NP_001177916.1
Original member Current member NCBI NM_001350607.2 NP_001337536.1 Accepted alive Link to Nucleotide Sequence:NM_001350607.2Link to Protein Sequence:NP_001337536.1Re-query CCDS DB by Nucleotide ID:NM_001350607Re-query CCDS DB by Protein ID:NP_001337536Link to BLAST:NP_001337536.1
Original member Current member NCBI NM_001394407.1 NP_001381336.1 Accepted alive Link to Nucleotide Sequence:NM_001394407.1Link to Protein Sequence:NP_001381336.1Re-query CCDS DB by Nucleotide ID:NM_001394407Re-query CCDS DB by Protein ID:NP_001381336Link to BLAST:NP_001381336.1
Original member Current member NCBI NM_001394408.1 NP_001381337.1 Accepted alive Link to Nucleotide Sequence:NM_001394408.1Link to Protein Sequence:NP_001381337.1Re-query CCDS DB by Nucleotide ID:NM_001394408Re-query CCDS DB by Protein ID:NP_001381337Link to BLAST:NP_001381337.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177916.1 483 Q05519-2 483 100% 0 0
NP_001337536.1 483 Q05519-2 483 100% 0 0
NP_001381336.1 483 Q05519-2 483 100% 0 0
NP_001381337.1 483 Q05519-2 483 100% 0 0

Chromosomal Locations for CCDS 53332.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 70221637 70221839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70228422 70228555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70232268 70232377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70234696 70234788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70235501 70235550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70237425 70237552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70239439 70239520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70244684 70244815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70246818 70246907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70249952 70250047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70250365 70250503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70250611 70250805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGAGCAACACTACCGTCGTCCCCAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGTG
GTGGTGGCGGCGGAGGCGGCGGCACCGAGGTAATCCAGGTGACTAATGTCTCCCCGAGCGCTAGCTCTGA
GCAGATGCGGACTCTCTTCGGTTTCCTAGGCAAGATCGACGAACTGCGCCTCTTCCCGCCGGATGATTCG
CCTTTGCCAGTCTCATCTCGTGTCTGCTTTGTTAAGTTCCATGATCCAGACTCAGCAGTTGTGGCACAGC
ATCTGACAAACACTGTATTCGTTGACAGAGCTTTGATAGTCGTACCATATGCAGAAGGAGTTATTCCTGA
TGAAGCTAAAGCTTTGTCTCTGTTGGCACCAGCTAATGCAGTGGCAGGTCTTCTGCCTGGTGGTGGACTC
CTGCCTACTCCTAACCCACTTACCCAGATTGGCGCTGTTCCACTGGCTGCTTTGGGGGCTCCTACTCTTG
ATCCTGCCCTTGCTGCACTTGGGCTTCCTGGAGCAAACTTGAACTCTCAGTCTCTTGCTGCAGATCAGTT
GCTGAAGCTTATGAGTACTGTTGATCCCAAGTTGAATCATGTAGCTGCTGGTCTCGTTTCACCAAGTCTG
AAATCGGATACCTCTAGTAAAGAAATAGAGGAAGCTATGAAAAGAGTACGAGAAGCACAGTCCCTAATTT
CTGCTGCTATAGAACCAGATAAGAAAGAAGAAAAAAGAAGGCATTCAAGATCAAGATCACGTTCTAGGAG
GAGGAGGACTCCCTCATCTTCTAGACACAGGCGGTCAAGAAGCAGATCGAGACGGCGGTCACATTCTAAG
TCTAGGAGTCGGCGACGATCCAAAAGCCCAAGGCGGAGAAGATCTCATTCCAGAGAAAGAGGTAGAAGGT
CAAGGAGCACATCAAAAACAAGAGACAAAAAGAAAGAAGACAAAGAAAAGAAACGTTCTAAAACACCACC
AAAAAGTTACAGCACAGCCAGACGTTCTAGAAGTGCAAGCAGAGAGAGACGACGACGAAGAAGCAGGAGT
GGCACAAGATCTCCTAAAAAGCCTCGGTCTCCTAAAAGAAAATTGTCCCGCTCACCATCCCCTAGGAGAC
ATAAAAAGGAGAAGAAGAAAGATAAAGACAAAGAAAGAAGTAGGGATGAAAGAGAACGATCAACAAGCAA
GAAGAAGAAGAGTAAAGATAAGGAAAAGGACCGGGAAAGAAAATCAGAGAGTGATAAAGATGTAAAAGTT
ACACGGGATTATGATGAAGAGGAACAGGGGTATGACAGTGAGAAAGAGAAAAAAGAAGAGAAGAAACCAA
TAGAAACAGGTTCCCCTAAAACAAAGGAATGTTCTGTGGAAAAGGGAACTGGTGATTCACTAAGAGAATC
CAAAGTGAATGGGGATGATCATCATGAAGAAGACATGGATATGAGTGACTGA

Translation (483 aa):
MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDS
PLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGL
LPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSL
KSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSK
SRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRS
GTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKV
TRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMDMSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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