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Report for CCDS6730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6730.1 Public Homo sapiens 9 TRMO 24 110 108 CCDS HistoryNCBI Gene:51531Re-query CCDS DB by CCDS ID:6730.1Re-query CCDS DB by GeneID:51531See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6730.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375119.8 ENSP00000364260.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375119.8Link to Ensembl Protein Viewer:ENSP00000364260.3Re-query CCDS DB by Nucleotide ID:ENST00000375119Re-query CCDS DB by Protein ID:ENSP00000364260
Original member Current member NCBI NM_001371657.1 NP_001358586.1 Accepted alive Link to Nucleotide Sequence:NM_001371657.1Link to Protein Sequence:NP_001358586.1Re-query CCDS DB by Nucleotide ID:NM_001371657Re-query CCDS DB by Protein ID:NP_001358586Link to BLAST:NP_001358586.1
Original member Current member NCBI NM_016481.5 NP_057565.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016481.5Link to Protein Sequence:NP_057565.3Re-query CCDS DB by Nucleotide ID:NM_016481Re-query CCDS DB by Protein ID:NP_057565Link to BLAST:NP_057565.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358586.1 441 Q9BU70 441 100% 0 0
NP_057565.3 441 Q9BU70 441 100% 0 0

Chromosomal Locations for CCDS 6730.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 97904733 97904992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97909960 97910616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97913401 97913558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97916164 97916338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97922418 97922493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGCGCGGCTTGGAGGAGTCGGGGCCTCGGCCTACAGCGACCCCGTGCGGCTGCGTTAAGCCGGCTCTGG
AGACAGGGAATCTTTTAACTGAGCCAGTCGGCTACTTGGAATCTTGTTTCTCGGCCAAGAATGGTACTCC
AAGACAGCCATCCATTTGTAGCTATTCTCGAGCCTGTTTGAGGATTAGAAAGAGGATCTTTAATAATCCT
GAACATTCCTTGATGGGCCTAGAACAGTTTTCTCATGTTTGGATTTTGTTTGTTTTTCACAAAAATGGTC
ATTTGAGCTGTAAGGCAAAAGTGCAGCCTCCTAGGCTGAATGGTGCAAAGACTGGAGTTTTTTCCACAAG
GAGCCCTCATCGTCCCAATGCAATAGGACTGACCCTGGCCAAGCTGGAAAAGGTAGAAGGTGGAGCTATA
TACCTTTCTGGAATTGACATGATACATGGCACACCCGTACTAGACATCAAGCCCTACATAGCTGAGTATG
ACTCACCGCAAAATGTGATGGAGCCTTTAGCAGACTTTAATTTACAGAATAACCAACATACACCAAACAC
TGTGTCCCAGTCTGACAGCAAGACTGACAGCTGTGACCAGCGACAGCTCTCAGGGTGTGATGAGCCACAA
CCCCACCATAGCACTAAGAGGAAACCTAAATGTCCTGAAGACAGAACTTCAGAAGAAAACTACCTGACAC
ACAGTGACACAGCCAGAATTCAGCAAGCATTTCCTATGCACAGGGAGATAGCAGTGGATTTTGGTTTGGA
ATCAAGACGTGATCAGAGTTCCAGCGTGGCAGAAGAACAAATTGGCCCATATTGCCCAGAGAAGAGCTTT
TCAGAGAAAGGTACAGACAAGAAGCTAGAAAGAGTGGAAGGAGCAGCAGTCTTGCAAGGAAGCAGGGCAG
AGACACAGCCCATGGCCCCTCACTGCCCTGCTGGAAGGGCTGATGGAGCTCCCCGCAGCGTGGTTCCTGC
CTGGGTGACAGAGGCTCCTGTGGCCACTTTAGAAGTGCGGTTTACTCCTCATGCCGAGATGGACCTTGGG
CAGCTCAGTTCACAAGATGTTGGTCAGGCGTCATTTAAATATTTTCAGTCAGCAGAGGAAGCAAAGCGTG
CCATTGAGGCTGTGCTGTCAGCGGATCCTCGGTCTGTGTACCGCCGGAAGCTTTGCCAGGACCGCCTTTT
CTACTTTACTGTAGACATAGCGCATGTCACTTGCTGGTTTGGTGATGGCTTTGCAGAGGTGCTGAGGATC
AAGCCGGCTTCTGAGCCTGTTCATATGACTGGCCCTGTGGGGTCCTTGGTGTCTCTAGGGTCTTAA

Translation (441 aa):
MRGLEESGPRPTATPCGCVKPALETGNLLTEPVGYLESCFSAKNGTPRQPSICSYSRACLRIRKRIFNNP
EHSLMGLEQFSHVWILFVFHKNGHLSCKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKLEKVEGGAI
YLSGIDMIHGTPVLDIKPYIAEYDSPQNVMEPLADFNLQNNQHTPNTVSQSDSKTDSCDQRQLSGCDEPQ
PHHSTKRKPKCPEDRTSEENYLTHSDTARIQQAFPMHREIAVDFGLESRRDQSSSVAEEQIGPYCPEKSF
SEKGTDKKLERVEGAAVLQGSRAETQPMAPHCPAGRADGAPRSVVPAWVTEAPVATLEVRFTPHAEMDLG
QLSSQDVGQASFKYFQSAEEAKRAIEAVLSADPRSVYRRKLCQDRLFYFTVDIAHVTCWFGDGFAEVLRI
KPASEPVHMTGPVGSLVSLGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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